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Design, docking study and ADME prediction of Isatin derivatives as anti-HIV agents

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Abstract

Non-nucleoside reverse transcriptase inhibitors (NNRTI) has a definitive role and most commonly used in treatment of HIV infection. NNRTI act by binding to specific binding site (non-nucleoside binding pocket-NNBP) in reverse transcriptase (RT) enzyme. With the objective of developing efficient NNRTI, we have designed various Isatin analogs for effective treatment of AIDS and were subjected to molecular docking studies on five different crystal structures of RT complexed with five different ligands Nevirapine, Delaviridine, Efavirenz, Etravirine, and Rilpivirine. Combined dock-score of compound N21, N11, N23 was found to be comparable with standards indicated that Isatin analogs have good binding affinity for NNBP. Docking results suggested that these types of compounds could be binding in the NNRTI binding site in a similar mode to a known non-nucleoside inhibitors. ADME properties of Isatin analogs were also analyzed using Qikprop 2.5 tool of Schrodinger software.

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References

  • Balzarini J (2004) Current status of nonnucleoside reverse transcriptase inhibitors of human immuno deficiency virus type 1. Curr Top Med Chem 4:921–944

    Google Scholar 

  • Barre Sinoussi F, Chermann JC, Rey F, Nugeyre MT, Chamart S (1983) Isolation of T-lymphotropic rétrovirus from a patient at risk for acquired immuno deficiency syndrome (AIDS). Science 220:868–871

    Article  PubMed  CAS  Google Scholar 

  • Bhattacharya SK, Chakraborti A (1998) Indian J Exp Biol 36:118–121

    PubMed  CAS  Google Scholar 

  • Carlson HA, Masukawa KM, McCammon JA (1999) Method for including the dynamic fluctuations of a protein in computer-aided drug design. J Phys Chem 103:10213–10219

    Article  CAS  Google Scholar 

  • Carlson HA, Masukawa KM, Rubins K, Bushman FD, Jorgensen WL, Lins RD, Briggs JM, McCammon JA (2000) Developing a dynamic pharmacophore model for HIV-1 integrase. J Med Chem 43:2100–2114

    Article  PubMed  CAS  Google Scholar 

  • Daisley RW, Shah VK (1984) Synthesis and antibacterial activity of some 5-nitro-2(3H)-one and their N-Mannich bases. J Pharm Sci 73:407–409

    Article  PubMed  CAS  Google Scholar 

  • Friesner RA, Banks JL, Murphy RB, Halgren TA, Klicic JJ, Mainz DT, Repasky MP, Knoll EH (2004) Glide: a new approach for rapid, accurate docking and scoring: 1. Method and assessment of docking accuracy. J Med Chem 47:1739–1749

    Article  PubMed  CAS  Google Scholar 

  • Friesner RA, Murphy RB, Repasky MP, Frye LL, Greenwood JR, Halgren TA, Sanschagrin PC, Mainz DT (2006) Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes. J Med Chem 49:6177

    Article  PubMed  CAS  Google Scholar 

  • Gottlieb MS, Schro R, Schankar HM, Weisman JD, Fan PT, Wolf RA, Saxon A (1981) Pneumocystis carinii pneumonia and mucosal candidiasis in previously healthy homosextual men: evidence of new acquired cellular immunodeficiency. N Engl J Med 305:1425

    Article  PubMed  CAS  Google Scholar 

  • Hayes MJ, Stein M, Weiser J (2004) Accurate calculations of ligand binding free energies. J Phys Chem 108:3572–3580

    Article  CAS  Google Scholar 

  • Jorgensen WL, Maxwell DS, Tirado-Rives J (1996) Development and testing of the OPLS all-atom force field on conformational energetics of organic liquids. J Am Chem Soc 118:11225–11236

    Article  CAS  Google Scholar 

  • Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (1997) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 23:3–25

    Article  CAS  Google Scholar 

  • Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (2001) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 46:3–26

    Article  PubMed  CAS  Google Scholar 

  • Pandeya SN, Sriram D, Nath G, DeClercq E (1999) Synthesis and anti-HIV activity of 4-[(1, 2-dihydro-2-oxo-3H-indol-3-ylidene)amino]-N-(4, 6-dimethyl-2-pyrimidinyl)-benzene sulfonamide and its derivatives. Eur J Pharm Sci 9:25–31

    Article  PubMed  CAS  Google Scholar 

  • Pandeya SN, Sriram D, Nath G, Clercq D, Arzneim Forsch (2000) Synthesis, antibacterial, antifungal and anti-HIV activities of Norfloxacin Mannich bases. Eur J Med Chem 50:55–60

    Google Scholar 

  • Piscapo B, Dium MV, Godliardi R, Cucciniello M, Veneruso G (1987) Studies on heterocyclic compounds indole-2,3-dione derivatives variously substituted hydrazones with antimicrobial activity. Bol Soc Ital Biol Sper 63:827–830

    Google Scholar 

  • Ragno R, Frasca S, Manetti F, Brizzi A, Massa S (2005) HIV-reverse transcriptase inhibition: inclusion of ligand-induced fit by cross-docking studies. J Med Chem 48:200–212

    Article  PubMed  CAS  Google Scholar 

  • Schiifer W, Friebe W, Leinert H, Mertens A, Poll T, Saal W, Zilch H, Nuber B, Zieglertsf ML (1993) Non-nucleoside inhibitors of HIV-f reverse transcriptase: molecular modeling and X-ray structure investigations. J Med Chem 36:726–732

    Article  Google Scholar 

  • Sriram D, Bal TR, Yogeeswari P (2005) Newer aminopyrimidinimino isatin analogues as non-nucleoside HIV-1 reverse transcriptase inhibitors for HIV and other opportunistic infections of AIDS. design, synthesis and biological evaluation. Farmaco 60:377–384

    Google Scholar 

  • Varma RS, Nobles WL (1967) Synthesis and antiviral and antibacterial activity of certain N-dialkylaminomethyl isatin β thiosemicarbazone. J Med Chem 10:972–974

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Shashikant V. Bhandari.

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Pawar, V.S., Lokwani, D.K., Bhandari, S.V. et al. Design, docking study and ADME prediction of Isatin derivatives as anti-HIV agents. Med Chem Res 20, 370–380 (2011). https://doi.org/10.1007/s00044-010-9329-y

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