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The phylogenetic position of the budding bacteria Blastobacter aggregatus and Gemmobacter aquatilis gen., nov. sp. nov.

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Abstract

Blastobacter aggregatus and a Blastobacter-like isolate (IFAM 1031) were analysed by the 16S ribosomal RNA cataloguing approach in order to determine their phylogenetic position. Both phenotypical similar organisms are members of the alpha-subdivision of purple phototrophic bacteria and their non-phototrophic relatives but they are not closely related: B. aggregatus clusters with Agrobacterium tumefaciens and Rhizobium species; the unnamed strain displays a moderate relationship to members of Rhodobacter and Paracoccus denitrificans, with which is shares the character of a nicked 23S rRNA. Although the budding isolate IFAM 1031 resembles members of Blastobacter phenotypically, in the broad DNA G+C content and in the fatty acid pattern, a unique set of characters was found which allows description of the isolate as the typus of a new genus for which Gemmobacter gen. nov. is proposed, with G. aquatilis sp. nov. as the type species. G. aquatilis harbors at least two plasmids of different size and unknown function.

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References

  • Aragno M, Schlegel HG (1981) The hydrogen-oxidizing bacteria. In: Starr MP, Stolp H, Trüper HG, Balows A, Schlegel HG (eds) The prokaryotes. A handbook of habitats, isolation and identification of bacteria. Springer, Berlin Heidelberg New York, pp 863–893

    Google Scholar 

  • Auran TB, Schmidt EL (1972) Similarities between Hyphomicrobium and Nitrobacter with respect to fatty acids. J Bacteriol 109:450–451

    Google Scholar 

  • Bernt E, Gutmann I (1974) Äthanol. In: Bergmeyer HU (ed) Methoden der enzymatischen Analyse. Verlag Chemie, Weinheim, pp 1457–1460

    Google Scholar 

  • Biebl H, Pfennig H (1981) Isolation of members of the family Rhodospirillaceae. In: Starr MP, Stolp H, Trüper HG, Balows A, Schlegel HG (eds) The prokaryotes. A handbook on habitats, isolation and identification of bacteria. Springer, Berlin Heidelberg New York, pp 267–273

    Google Scholar 

  • Birnboim HC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant DNA. Nucl Acids Res 6:1513–1523

    Google Scholar 

  • Buchanan RE, Gibbons NE (1974) Budding and/or appendaged bacteria. In: Buchanan RE, Gibbons NE (eds) Bergey's manual of determinative bacteriology, 8th edn. Williams and Wilkins, Baltimore, pp 148–166

    Google Scholar 

  • Carter RN, Schmidt JM (1976) Fatty acid composition of selected prosthecate bacteria. Arch Microbiol 110:91–94

    Google Scholar 

  • Cohen-Bazire G, Sistrom WR, Stanier RY (1957) Kinetic studies of pigment synthesis by nonsulfur purple bacteria. J Cell Comp Physiol 49:25–68

    Google Scholar 

  • Constantopoulos G, Bloch K (1967) Isolation and characterization of glycolipids from some photosynthetic bacteria. J Bacteriol 93:1788–1793

    Google Scholar 

  • De Smedt J, De Ley J (1977) Intra- and intergeneric similarities of Agrobacterium ribosomal ribonucleic acid cistrons. Int J Syst Bacteriol 27:222–240

    Google Scholar 

  • Dunkelblum E, Tan SH, Silk PJ (1985) Double bond location in monounsaturated fatty acids by dimethyldisulphide derivatization and mass spectrometry: Application to analysis of fatty acids in pheromone glands of four Lepidoptera. J Chem Ecol 11:265–277

    Google Scholar 

  • Eckhardt FEW, Roggentin P, Hirsch P (1979) Fatty acid composition of various hyphal budding bacteria. Arch Microbiol 120:81–85

    Google Scholar 

  • Fischer A, Roggentin T, Schlesner H, Stackebrandt E (1985) 16S ribosomal RNA oligonucleotide cataloguing and the phylogenetic position of Stella humosa. Syst Appl Microbiol 6:43–47

    Google Scholar 

  • Fox GE, Stackebrandt E (1987) The application of 16S rRNA cataloguing and 5S rRNA sequencing in bacterial systematics. In: Colwell RR (ed) Methods in microbiology, vol 19. Academic Press, London New York (in press)

    Google Scholar 

  • Fox GE, Pechman KR, Woese CR (1977) Comparative cataloguing of 16S ribosomal ribonucleic acid. Molecular approach to prokaryotic systematics. Int J Syst Bacteriol 27:44–57

    Google Scholar 

  • Gebers R, Mandel M, Hirsch P (1981) Deoxyribonucleic acid base composition and nucleotide distribution of Pedomicrobium ssp. Zbl Bakt Hyg I Abt Orig C2:332–338

    Google Scholar 

  • Gibson J, Stackebrandt E, Zablen LB, Gupta R, Woese CR (1979) A phylogenetic analysis of the purple photosynthetic bacteria. Curr Microbiol 3:59–64

    Google Scholar 

  • Hennecke H, Kaluza K, Thony B, Fuhrmann M, Ludwig W, Stackebrandt E (1985) Concurrent evolution of nitrogenase genes and 16S rRNA in Rhizobium species and other nitrogen fixing bacteria. Arch Microbiol 142:342–348

    Google Scholar 

  • Hirsch P, Müller M (1985) Blastobacter aggregatus sp. nov., Blastobacter capsulatus sp. nov. and Blastobacter denitrificans sp. nov., new budding bacteria from freshwater habitats. Syst Appl Microbiol 6:261–286

    Google Scholar 

  • Hohorst HJ (1974) Lactatdehydrogenase. In: Bergmeyer HU (ed) Methoden der enzymatischen Analyse. Verlag Chemie, Weinheim, pp 1425–1429

    Google Scholar 

  • Holz G, Bergmeyer HU (1974) Acetat. In: Bergmeyer HU (ed) Methoden der enzymatischen Analyse. Verlag Chemie, Weinheim, pp 1480–1490

    Google Scholar 

  • Kado CJ, Liu S-T (1981) Rapid procedure for detection and isolation of large and small plasmids. J Bacteriol 145:1365–1373

    Google Scholar 

  • Kraft I, Bock E (1984) Plasmids in Nitrobacter. Arch Microbiol 140:79–82

    Google Scholar 

  • Larebeke N van, Genetello TH, Hernalsteens JP, De Picker A, Zaenen I, Nessens E, Montagu N van, Schell J (1977) Transfer of the T1 plasmids between Agrobacterium strains by mobilisation with the conjugative plasmid RP4. Mol Gen Genetics 152:119–124

    Google Scholar 

  • Loginova NV, Trotsenko YuA (1979) Blastobacter viscosus, a new species of methanol utilizing facultatively autotrophic bacteria. Mikrobiologiya 48:785–791 (transl. 644–651)

    Google Scholar 

  • Mandel M, Marmur J (1968) Use of ultraviolett absorbance temperature profile for determining the guanine plus cytosine content of DNA. In: Grossman L, Moldave K (eds) Methods in enzymology, vol 12B. Academic Press, London, pp 195–206

    Google Scholar 

  • Maniatis T, Fitsch EF, Sambrock J (1982) Molecular cloning, a laboratory manual. Cold Spring Harbor Laboratory

  • Marmur J (1961) A procedure for the isolation of DNA from microorganisms. J Mol Biol 3:208

    Google Scholar 

  • Marrs B, Kaplan S (1970) 23S precursor ribosomal DNA of Rhodopseudomonas sphaeroides. J Mol Biol 49:297–317

    Google Scholar 

  • Moore RL (1977) Ribosomal ribonucleic acid cistron homologies among Hyphomicrobium and various other bacteria. Can J Microbiol 23:478–482

    Google Scholar 

  • Nichols PD, Guckert JB, White DC (1986) Determination of monounsaturated fatty acid double-bond position and geometry for microbial monocultures and complex consortia by capillary GC-MS of their dimethyl disulphide adducts. J Microbiol Meth 5:49–55

    Google Scholar 

  • Ohta H, Hattori T (1983) Agromonas oligotrophica gen. nov., sp. nov., a nitrogen-fixing oligotrophic bacterium. Antonie van Leeuwenhoek J Microbiol 49:429–446

    Google Scholar 

  • Rhuland LE, Work E, Denman RF, Hoare DS (1955) The behavior of the isomers of ɛ-diaminopimelic acid on paper chromatographs. J Americ Chem Soc 77:4844–4846

    Google Scholar 

  • Seewaldt E, Schleifer KH, Bock E, Stackebrandt E (1982) The close phylogenetic relationship of Nitrobacter and Rhodopseudomonas palustris. Arch Microbiol 131:287–290

    Google Scholar 

  • Sly LI (1985) Emendation of the genus Blastobacter Zavarzin Syst Bacteriol 35:40–45

    Google Scholar 

  • Stackebrandt E, Ludwig W, Schleifer KH, Gross HJ (1981) Rapid cataloguing of ribonuclease T1 resistant oligonucleotides from ribosomal RNAs for phylogenetic studies. J Mol Evol 17:227–236

    Google Scholar 

  • Stackebrandt E, Ludwig W, Fox GE (1985) 16S ribosomal RNA oligonucleotide sequencing. In: Gottschalk G (ed) Methods in microbiology, vol 18. Academic Press, London New York, pp 75–107

    Google Scholar 

  • Stackebrandt E, Fischer A, Hirsch P, Roggentin T, Schlesner H (1986) The phylogeny of an ancient group of budding peptidoglycan-less eubacteria: the genera Planctomyces and Pirella. Endocyt Cell Res 3:29–40

    Google Scholar 

  • Staley JT (1968) Prosthecomicrobium and Ancalomicrobium, new prosthecate freshwater bacteria. J Bacteriol 95:1921–1942

    Google Scholar 

  • Traub P, Mizushima S, Lowry CV, Nomura (1971) Reconstitution of ribosomes from subribosomal components. In: Grossman L, Moldave K (eds) Methods in enzymology, vol XX, C. Academic Press, London New York, pp 391–407

    Google Scholar 

  • Truffaut E, Sebald M (1983) Plasmid detection and isolation in strains of Clostridium acetobutylicum and related species. Mol Gen Genet 189:178–180

    Google Scholar 

  • Woese CR, Stackebrandt E, Weisburg WG, Paster BJ, Madigan MT, Fowler VJ, Hahn CM, Blanz P, Gupta R, Nealson KH, Fox GE (1984) The phylogeny of purple bacteria: the alpha subdivision. Syst Appl Microbiol 15:315–326

    Google Scholar 

  • Wood BJB, Nichols BW, James AT (1965) The lipids and fatty acid metabolism of photosynthetic bacteria. Biochim Biophys Acta 106:261–273

    Google Scholar 

  • Zablen L, Woese CR (1975) Prokaryote phylogeny. IV. Concerning the phylogenetic status of a photosynthetic bacterium. J Mol Evol 5:25–34

    Google Scholar 

  • Zavarzin GA (1961) Budding bacteria. Microbiologiya 30:952–975

    Google Scholar 

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Rothe, B., Fischer, A., Hirsch, P. et al. The phylogenetic position of the budding bacteria Blastobacter aggregatus and Gemmobacter aquatilis gen., nov. sp. nov.. Arch. Microbiol. 147, 92–99 (1987). https://doi.org/10.1007/BF00492911

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  • DOI: https://doi.org/10.1007/BF00492911

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