Abstract
Positional cloning studies conducted on a region of chromosome 2q providing evidence for linkage to type 2 diabetes implicated genetic variation at the calpain-10 gene (CAPN10) in susceptibility to type 2 diabetes. The variants identified in these studies are located in introns, rather than in coding sequence. It was proposed that the cumulative effects of a combination of variants, rather than variation at a single site, increase the risk of type 2 diabetes. Confirmation of the hypothesis that non-coding sequence variation in CAPN10 affects susceptibility to type 2 diabetes has implications for how we search for susceptibility variants and interpret results of positional cloning studies for complex disorders, and suggests a new pathway in glucose homeostasis. We review the results of follow-up studies on the CAPN10 finding, and consider the issues inherent in conclusively establishing that particular genetic variation affects a complex phenotype.
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References and Recommended Reading
Wiltshire S, Hattersley AT, Hitman GA, et al.: A genome-wide scan for loci predisposing to type 2 diabetes in a UK population (The Diabetes UK Warren Repository): analysis of 573 pedigrees provides independent replication of a susceptibility locus on chromosome 1q. Am J Hum Genet 2001, 69:553–569.
Cox NJ: Challenges in identifying genetic variation affecting susceptibility to type 2 diabetes: examples from studies of the calpain-10 gene. Hum Mol Genet 2001, 10:2301–2305.
Pritchard J:Are rare variants responsible for common disorders? Am J Hum Genet 2001, 69:124–137. Provides a theoretic framework for addressing the question of what we expect the frequency of susceptibility alleles for complex disorders to be.
Altshuler D, Hirschhorn JN, Klannemark M, et al.: The common PPARgammaPro12Ala polymorphism is associated with decreased risk of type 2 diabetes. Nat Genet 2000, 26:76–80.
Hanis CL, Boerwinkle E, Chakraborty R, et al.: A genome-wide search for human non-insulin-dependent (type 2) diabetes genes reveals a major susceptibility locus on chromosome 2. Nat Genet 1996, 13:161–166.
Horikawa Y, Oda N, Cox NJ, et al.: Genetic variation in the gene encoding calpain-10 is associated with type 2 diabetes mellitus. Nat Genet 2000, 26:163–175. Describes the positional cloning studies leading to the identification of calpain 10 as a candidate gene for type 2 diabetes. Summarized are the linkage disequilibrium mapping, the analytic methods developed for the study, functional studies on the implicated variation, and initial replication studies in other populations.
Fullerton SM, Bartoszewicz A, Ybazeta G, et al.: Geographic and haplotype structure of candidate type 2 diabetes susceptibility variants at the calpain-10 locus. Am J Hum Genet 2002, in press.
Carafoli E, Molinari M: Calpain: a protease in search of a function? Biochem Biophys Res Commun 1998, 247:193–203.
Sreenan SK, Zhou Y-P, Otani K, et al.: Calpains play a role in insulin secretion and action. Diabetes 2001, 50:2013–2020. Summarizes the studies showing that administration of calpain inhibitors leads to effects on insulin action and insulin secretion. These studies provide support for the hypothesis that calpain proteases play a role in glucose homeostasis.
Baier LJ, Permana P, Yang X, et al.: A calpain-10 gene polymorphism is associated with reduced muscle mRNA levels and insulin resistance. J Clin Invest 2000, 106:R69-R73.
Yang X, Pratley RE, Baier LJ, et al.: Reduced skeletal muscle calpain-10 transcript level is due to a cumulative decrease in major isoforms. Mol Genet Metab 2001, 73:111–113.
Elbein SC, Chu W, Ren Q, et al.: Role of calpain-10 gene variants in familial type 2 diabetes. J Clin Endocrinol Metab 2002, in press.
Lynn S, Evans JC, White C, et al.: Variation in the calpain-10 gene affects blood glucose levels in the British population. Diabetes 2002, 51:247–250.
Stumvoll M, Fritsche A, Madaus A, et al.: Functional significance of the UCSNP-43 polymorphism in the CAPN10 gene for proinsulin processing and insulin secretion in nondiabetic Germans. Diabetes 2001, 50:2161–2163.
Evans JC, Frayling TM, Cassell PG, et al.: Association studies of the calpain-10 gene with type 2 diabetes mellitus in the United Kingdom. Am J Hum Genet 2001, 69:544–552.
Garant MJ, Kao WHL, Brancati F, et al.: SNP43 of CAPN10 and the risk of type 2 diabetes in African-Americans. Diabetes 2002, 51:231–237.
Ehrmann DA, Schwarz PEH, Hara M, et al.: Relationship of calpain-10 genotype to phenotypic features of polycystic ovary syndrome. J Clin Endocrinol Metab 2002, in press.
Tsai H-J, Sun G, Weeks DE, et al.: Type 2 diabetes and three calpain-10 gene polymorphisms in Samoans: no evidence of association. Am J Hum Genet 2001, 69:1236–1244.
Cox NJ, Frigge M, Nicolae DL, et al.: Loci on chromosomes 2 (NIDDM1) and 15 interact to increase susceptibility to diabetes in Mexican Americans. Nat Genet 1999, 21:213–215.
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Cox, N.J. Calpain 10 and genetics of type 2 diabetes. Curr Diab Rep 2, 186–190 (2002). https://doi.org/10.1007/s11892-002-0079-1
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DOI: https://doi.org/10.1007/s11892-002-0079-1