Abstract
Behavioral responses of fishes to variability in environmental conditions and habitat quality are central to population-level demographic processes. Although field surveys can correlate abundance to habitat variables (physiochemical, biotic, and structural), they cannot provide mechanistic explanations. Moreover, field surveys are often stratified by time or geographic criteria relevant to humans, whereas fishes stratify by habitat variables relevant to them. If mechanisms underlying behavior are not explicitly understood, conclusions based on survey data can lead to biased inferences as to species-specific habitat requirements and preferences, as well as changes in stock size occurring over time. Because physiology is the transfer function that links specific environmental conditions to behavior and fitness, we argue great gains can be made through the integration of physiology and fisheries science. These are complementary disciplines, albeit ones that generally function at very different temporal and spatial scales, as well as different levels of biological organization. We argue more specifically that integrating physiological approaches with behavioral studies and traditional fisheries survey data (where each approach develops hypotheses to be tested in the other) can mechanistically link processes from cells through populations to place fisheries management in an appropriate ecosystem context. We further contend that population- and species-specific mechanistic understanding of physiological abilities and tolerances can significantly help to: improve stock assessments, describe essential fish habitat, predict rates of post-release mortality, develop effective bycatch reduction strategies, and forecast the population effects of increases in global temperatures and ocean acidification.
Similar content being viewed by others
References
Ahrens RNM, Walters CJ, Christensen V (2012) Foraging arena theory. Fish Fish 13(1):41–59
Allison EH, Perry AL, Badjeck M-C et al (2009) Vulnerability of national economies to the impacts of climate change on fisheries. Fish Fish 10:173–196
Alunno-Bruscia M, van der Veer H, Kooijman SALM (2009) The AquaDEB project (phase I): analysing the physiological flexibility of aquatic species and connecting physiological diversity to ecological and evolutionary processes by using Dynamic Energy Budgets. J Sea Res 62:43–48
Araújo MB, Peterson AT (2012) Uses and misuses of bioclimatic envelope modeling. Ecology 93:1527–1539
Beamish FWH (1978) Swimming capacity. In: Hoar WS, Randall DJ (eds) Fish physiology, vol VII. Academic Press, New York, pp 101–187
Beitinger TL, Fitzpatrick LC (1979) Physiological and ecological correlates of preferred temperature in fish. Am Zool 19:319–329
Bernal D, Sepulveda C, Musyl M, Brill R (2009) The eco-physiology of swimming and movement patterns of tunas, billfishes, and large pelagic sharks. In: Domenici P, Kapoor BG (eds) Fish locomotion: an etho-ecological approach. Science Publishers, Enfield, pp 436–483
Bigelow KA, Maunder MN (2007) Does habitat or depth influence catch rates of pelagic species? Can J Fish Aquat Sci 64:1581–1594
Block BA, Dewar H, Blackwell SB et al (2001) Migratory movements, depth preferences, and thermal biology of Atlantic bluefin tuna. Science 293:1310–1314
Braaten PJ, Guy CS (1999) Relations between physicochemical factors and abundance of fishes in tributary confluences of the lower channelized Missouri River. Trans Am Fish Soc 128:1213–1221
Brander KM (2007) Global fish production and climate change. Proc Nat Acad Sci USA 104:19709–19714
Brander K (2010) Impacts of climate change on fisheries. J Mar Syst 79:389–402
Braun CD, Kaplan MB, Horodysky AZ, Llopiz JK (2015) Satellite telemetry reveals physical processes driving billfish behavior. Anim Biotelemetry 3:2
Bridger CJ, Booth RK (2003) The effects of biotelemetry transmitter presence and attachment procedures on fish physiology and behavior. Rev Fish Sci 11:13–34
Brill RW (1994) A review of temperature and oxygen tolerance studies of tunas pertinent to fisheries oceanography, movement models and stock assessments. Fish Oceanogr 3:204–216
Brill R, Lutcavage M (2001) Understanding environmental influences on movements and depth distribution of tunas and billfish can significantly improve stock assessments. In: Sedberry GR (ed) Island in the stream: oceanography and fisheries of the charleston bump, Am Fish Soc Symp 25, Bethesda, pp 179–198
Brill RW, Lowe TE, Cousins KL (1998) How water temperature really limits the vertical movements of tunas and billfishes—it’s the heart stupid. In: Gamperl K, Farrell A, MacKinlay D (eds) International conference of biological fishers, pp 57–62
Brill R, Block B, Boggs C, Bigelow K, Freund E, Marcinek D (1999) Horizontal movements and depth distribution of large, adult yellowfin tuna (Thunnus albacares) near the Hawaiian Islands, recorded using ultrasonic telemetry: implications for the physiological ecology of pelagic fishes. Mar Biol 133:395–408
Brill RW, Bigelow KA, Musyl MK, Fritsches KA, Warrant EJ (2005) Bigeye tuna behavior and physiology… their relevance to stock assessments and fishery biology. Coll Vol Sci Pap Int Comm Cons Atl Tunas 57:142–161
Brill R, Bushnell P, Schroff S, Seifert R, Galvin M (2008a) Effects of anaerobic exercise accompanying catch-and-release fishing on blood-oxygen affinity of the sandbar shark (Carcharhinus plumbeus, Nardo). J Exp Mar Biol Ecol 34:132–143
Brill RW, Magel C, Davis MW, Hannah RW, Rankin PS (2008b) Effects of events accompanying capture (rapid decompression and exposure to bright light) on visual function in black rockfish (Sebastes melanops) and Pacific halibut (Hippoglossus stenolepis). Fish Bull 106:427–437
Brill R, Bushnell P, Smith L, Speaks C, Sundaram R, Stroud E, Wang J (2009) The repulsive and feeding-deterrent effects of electropositive metals on juvenile sandbar sharks (Carcharhinus plumbeus). Fish Bull 107:298–307
Brown JH, Gillooly JF, Allen AP, Savage VM, West GB (2004) Toward a metabolic theory of ecology. Science 85(7):1771–1789
Brownscombe JW, Thiem JD, Hatry C, Cull F, Haak CR, Danylchuk AJ, Cooke SJ (2013) Recovery bags reduce post-release impairments in locomotory activity and behaviour of bonefish (Albula spp.) following exposure to angling-related stressors. J Exp Mar Biol Ecol 440:207–215
Bulger AJ, Hayden BP, Monaco ME, Nelson DM, McCormick-Ray MG (1993) Biologically-based estuarine salinity zones derived from a multivariate analysis. Estuaries 16:311–322
Capossela KM, Fabrizio MC, Brill RW (2013) Migratory and within-estuary behaviors of adult summer flounder (Paralichthys dentatus) in a lagoon system of the southern mid-Atlantic Bight. Fish Bull 111:189–201
Carlson SM, Seamons TR (2008) A review of quantitative genetic components of fitness in salmonids: implications for adaptation to future change. Evol Appl 1:222–238
Cayré P, Marsac F (1993) Modeling the yellowfin tuna (Thunnus albacares) vertical distribution using sonic tagging results and local environmental parameters. Aquat Liv Res 6:1–14
Cheung WWL, Lam VWY, Sarmiento JL, Kearney K, Watson R, Zeller D, Pauly D (2010) Large-scale redistribution of maximum fisheries catch potential in the global ocean under climate change. Glob Change Biol 16:24–35
Chown SL, Gaston KJ (2008) Macrophysiology for a changing world. Proc R Soc B 275:1469–1478
Chown SL, Gaston KJ, Robinson D (2004) Macrophysiology: large-scale patterns in physiological traits and their ecological implications. Funct Ecol 18:159–167
Claireaux G, Lefrancoise C (2007) Linking environmental variability and fish performance: integration through the concept of scope for activity. Phil Trans R Soc B 362:2031–2041
Clark TD, Sandblom E, Jutfelt F (2013) Aerobic scope measurements of fishes in an era of climate change: respirometry, relevance and recommendations. J Exp Biol 216:2771–2782
Colosimo A, Guiliani A, Maranghi F et al (2003) Physiological and genetic adaptation to temperature in fish populations. Cont Shelf Res 23:1919–1928
Cooke SJ, O’Connor CM (2010) Making conservation physiology relevant to policy makers and conservation practitioners. Conserv Lett 2:159–166
Cooke SJ, Philipp DP (2004) Behavior and mortality of caught-and-released bonefish (Albula vulpes) in Bahamian waters with implications for a sustainable recreational fishery. Biol Conserv 118:599–607
Cooke SJ, Schramm HL (2007) Catch-and-release science and its application to conservation and management of recreational fisheries. Fish Manag Ecol 14:73–79
Cooke SJ, Suski CD (2008) Ecological restoration and physiology: an overdue integration. Biosci 58:957–968
Cooke SJ, Schreer JF, Dunmall KM, Philipp DP (2002) Strategies for quantifying sublethal effects of marine catch-and-release angling—insights from novel freshwater applications. Am Fish Soc Symp 30:121–134
Cooke SJ, Hinch SG, Farrell AP et al (2008) Mechanistic understanding of fish migrations by linking telemetry with physiology, behavior, genomics and experimental biology: an interdisciplinary case study on adult Fraser River sockeye salmon. Fisheries 33:321–339
Cooke SJ, Hinch SG, Lucas MC, Lutcavage M (2012a) Chapter 18—biotelemetry and biologging. In: Zale AV, Parrish DL, Sutton TM (eds) Fisheries techniques, 3rd edn. American Fisheries Society, Bethesda, pp 819–860
Cooke SJ, Hinch SG, Donaldson MR et al (2012b) Conservation physiology in practice: how physiological knowledge has improved our ability to sustainably manage Pacific salmon during up-river migration. Phil Trans Roy Soc B. 367:1757–1769
Cooke SJ, Sack L, Franklin CE, Farrell AP, Beardall J, Wikelski M, Chown SL (2013) What is conservation physiology? Perspectives on an increasingly integrated and essential science. Conserv Physiol. doi:10.1093/conphys/cot001
Cooke SJ, Blumstein DT, Buchholz R et al (2014) Physiology, behaviour and conservation. Physiol Biochem Zool 87:1–14
Covich AP, Fritz SC, Lamb PJ, Marzolf RD, Matthews WJ, Poiani KA, Prepas EE, Richman MB, Winter TC (1997) Potential effects of climate change on aquatic ecosystems of the great Plains of North America. Hydrolog Process 11:993–1021
Crossin GT, Cooke SJ, Goldbogen JA, Phillips RA (2014) Tracking fitness in marine vertebrates: a review of current knowledge and opportunities for future research. Mar Ecol Prog Ser 496:1–17
Danylchuk SE, Danylchuk AJ, Cooke SJ, Goldberg TL, Koppelman J, Philipp DP (2007) Effects of recreational angling on the post-release behavior and predation of bonefish (Albula vulpes): the role of equilibrium status at time of release. J Exp Mar Biol Ecol 346:127–133
Davie PS, Kopf RK (2006) Physiology, behavior, and welfare of fish during recreational fishing and after release. New Zealand Vet Journ 54:161–172
Davis MW (2002) Key principles for understanding fish bycatch discard mortality. Can J Fish Aquat Sci 59:1834–1843
Davis MW, Ottmar ML (2006) Wounding and reflex impairment may be predictors for mortality in discarded or escaped fish. Fish Res 82:1–6
Denny M, Helmuth B (2009) Confronting the physiological bottleneck: a challenge from ecomechanics. Integr Comp Biol 49:197–201
Devictor V, Clavel J, Julliard R, Lavergne S, Mouillot D, Thuiller W, Venail P, Villéger S, Mouquet N (2010) Defining and measuring ecological specialization. J Appl Ecol 47:15–25
Edeline E, Carlson SM, Stige LC, Winfield IJ, Fletcher JM, James JB, Haugen TO, Vøllestad LA, Stenseth NC (2007) Trait changes in a harvested population are driven by a dynamic tug-of-war between natural and harvest selection. Proc Natl Acad Sci USA 104:15799–15804
Elton C (1927) Animal Ecology. Sedgwick and Jackson, London
Essington TE, Beaudreau AH, Wiedenmann J (2006) Fishing through marine food webs. Proc Nat Acad Sci USA 103:3171–3175
Evans K, Langley A, Clear NP et al (2008) Behaviour and habitat preferences of bigeye tuna (Thunnus obesus) and their influence on longline fishery catches in the western Coral Sea. Can J Fish Aquat Sci 65:2427–2443
Farrell AP, Gallaugher PE, Fraser J et al (2001) Successful recovery of the physiological status of coho salmon on board a commercial gillnet vessel by means of a newly designed revival box. Can J Fish Aquat Sci 58:1932–1946
Fraser PJ, Cruickshank SF, Shelmerdine RL, Smith LE (2008) Hydrostatic pressure receptors and depth usage in crustacea and fish. J Inst Nav 55:159–165
Frick LH, Reina RD, Walker TI (2009) The physiological response of Port Jackson sharks and Australian swell sharks to sedation, gill-net capture, and repeated sampling in captivity. N Am J Fish Manage 29:127–139
Fry FEJ (1947) Effect of environment on animal activity. Univ Toronto Stud Biol Ser 55:1–62
Fry FEJ (1971) The effect of environmental factors on the physiology of fish. In: Hoar WS, Randall DJ (eds) Fish physiology, vol VI. Environmental relations and behavior. Academic Press, New York, pp 1–98
Furey NB, Dance MA, Rooker JR (2013) Fine-scale movements and habitat use of juvenile southern flounder Paralichthys lethostigma in an estuarine seascape. J Fish Biol 82:1469–1483
Galli GLJ, Shiels HA, Brill RW (2009) Temperature sensitivity of cardiac function in pelagic fishes with different vertical mobilities: yellowfin tuna (Thunnus albacares), bigeye tuna (Thunnus obesus), mahimahi (Coryphaena hippurus), and swordfish (Xiphias gladius). Physiol Biochem Zool 82:280–290
Gibson RN (2003) Go with the flow: tidal migration in marine animals. Hydrobiologia 503:153–161
Giomi F, Raicevich S, Giovanardi O, Pranovi F, DiMuro P, Beltramini M (2008) Catch me in winter! Seasonal variation in air temperature severely enhances physiological stress and mortality of species subjected to sorting operations and discarded during annual fishing activities. Hydrobiologia 606:195–202
Glass CW, Wardle CS (1995) Studies on the use of visual stimuli to control fish escape from codends. II. The effect of a black tunnel on the reaction behavior of fish in otter trawl codends. Fish Res 23:165–174
Goldman K, Anderson S, Latour R, Musick J (2004) Homethermy in adult salmon sharks, Lamna ditropis. Environ Biol Fishes 71:403–411
Grinnell J (1917) The niche-relationships of the California Thrasher. Auk 34:427–433
Gumm JM (2012) Sex recognition of female-like sneaker males in the Comanche Springs pupfish, Cyprinodon elegans. Anim Behav 83:1421–1426
Halpern BS, Walbridge S, Selkoe KA et al (2008) A global map of human impact on marine ecosystems. Science 319(5865):948–952
Halpern BS, Longo C, Hardy D et al (2012) An index to assess the health and benefits of the global ocean. Nature 488:615–620
Hara TJ, Zielinski BS (2007) Sensory systems neuroscience. Fish Physiology 25, Academic Press, San Diego
Hare JA, Alexander MA, Fogarty MJ, Williams EH, Scott JD (2010) Forecasting the dynamics of a coastal fishery species using a coupled climate-population model. Ecol Appl 20:452–464
Healy K, McNally L, Ruxton GD, Cooper N, Jackson AL (2013) Metabolic rate and body size are linked with perception of temporal information. Anim Behav 86:685–696
Helmuth B (2009) From cells to coastlines: how can we use physiology to forecast the impacts of climate change? J Exp Biol 212:753–760
Helmuth B, Kingsolver JG, Carrington E (2005) Biophysics, physiological ecology, and climate change: does mechanism matter? Ann Rev Physiol 67:177–201
Hinch SG, Farrell AP, Cooke SJ et al (2009) Using physiological telemetry and intervention experiments to examine the maladaptive shift in Fraser River’s Late-Run sockeye salmon spawning migration. Am Fish Soc Symp 69:891–894
Horodysky AZ, Brill RW, Fine ML, Musick JA, Latour RJ (2008a) Acoustic pressure and acceleration thresholds in six sciaenid fishes. J Exp Biol 211:1504–1511
Horodysky AZ, Brill RW, Warrant EJ, Musick JA, Latour RJ (2008b) Comparative visual function in five sciaenid fishes. J Exp Biol 211:3601–3612
Horodysky AZ, Brill RW, Warrant EJ, Musick JA, Latour RJ (2010) Comparative visual function in four piscivorous fishes inhabiting Chesapeake Bay. J Exp Biol 213:1751–1761
Horodysky AZ, Brill RW, Bushnell PG, Musick JA, Latour RJ (2011) Comparative metabolic rates of common western North Atlantic sciaenid fishes. J Fish Biol 79:235–255
Huey RB (1991) Physiological consequences of habitat selection. Am Nat 137:S91–S115
Hugie DM, Dill LM (1994) Fish and game: a game theoretic approach to habitat selection by predators and prey. J Fish Biol 45:151–169
Hurlbert SH (1984) Pseudoreplication and the design of ecological field experiments. Ecol Monogr 54:187–211
Hussey NE, Kessel ST, Aarestrup K, Cooke SJ, Cowley PD, Fisk AT, Harcourt RG, Holland KN, Iverson SJ, Kocik JF, Mills Flemming JE, Whoriskey FG (2015) Aquatic animal telemetry: a panoramic window into the underwater world. Science 348:1221–1231
Hutchenson GE (1957) Concluding remarks. Cold Spring Harbor Symp Quant Biol. 22:415–427
Hutchenson GE (1978) An introduction to population ecology. Tale University Press, New Haven
Ingolfsson OA, Soldal A, Huse I, Breen MB (2007) Escape mortality of cod, saithe, and haddock in a Barents Sea trawl fishery. ICES J Mar Sci 64:836–1844
IPCC (2001) Climate change 2001, synthesis report: a contribution of working groups I, II, and III to the third assessment report of the intergovernmental panel on climate change. Cambridge University Press, Cambridge
Iwama GK, Pickering AD, Sumpter JP, Schreck CB (1997) Fish stress and health in aquaculture. Society for Experimental Biology Seminar Series 62. Cambridge University Press, Cambridge
Jackson JBC, Kirby MX, Berger WH et al (2001) Historical overfishing and recent collapse of coastal ecosystems. Science 293:629–638
Jacquet JL, Pauly D (2007) The rise of seafood awareness campaigns in an era of collapsing fisheries. Mar Pol 31:308–313
Jeschke JM, Strayer DL (2008) Usefulness of bioclimatic models for studying climate change and invasive species. Ann NY Acad Sci 1134:1–24
Jobling M (1981) Temperature tolerance and the final preferendum—rapid methods for the assessment of optimum growth temperatures. J Fish Biol 19:439–455
Josse E, Bach P, Dagorn L (1998) Simultaneous observations of tuna movements and their prey by sonic tracking and acoustic surveys. Hydrobiologia 317(372):61–69
Jusup M, Klanscek T, Matsuda H, Kooijman SALM (2011) A full lifecycle bioenergetic model for bluefin tuna. PLoS ONE 6:e21903
Kaijura SM, Cornett AD, Yopak KE (2010) Sensory adaptations to the environment: electroreceptors as a case study. In: Carrier JC, Musick JA, Heithaus MR (eds) Sharks and their relatives II. Biodiversity, adaptive physiology, and conservation. CRC Press, Boca Raton, pp 393–433
Kaiser MJ, Spencer BE (1995) Survival of by-catch from a beam trawl. Mar Ecol Prog Ser 126:31–38
Kalinoski M, Hirons A, Horodysky A, Brill R (2014) Spectral sensitivity, light sensitivity, and temporal resolution of the visual systems in three sympatric coastal shark species: sandbar shark (Carcharhinus plumbeus), smooth dogfish (Mustelus canis canis), and spiny dogfish (Squalus acanthias). J Comp Physiol A 200:997–1013
Kapoor BG, Hara TJ (2001) Sensory biology of jawed fishes: new insights. Science Publishers Inc, Huntington
Kearney M (2006) Habitat, environment, and niche: What are we modeling? Oikos 115:186–191
Kearney M, Porter WP (2009) Mechanistic niche modelling: combining physiological and spatial data to predict species’ ranges. Ecol Lett 12:334–350
Kemp WM, Boynton WR, Adolf JE et al (2005) Eutrophication of Chesapeake Bay: historical trends and ecological interactions. Mar Ecol Progr Ser 303:1–29
Kerr SR, Werner EW (1980) Niche theory in fisheries ecology. Trans Am Fish Soc 109(2):254–260
Kerstetter DW, Luckhurst BE, Prince ED, Graves JE (2003) Use of pop-up satellite archival tags to demonstrate survival of blue marlin (Makaira nigricans) released from pelagic longline gear. Fish Bull 101:939–948
Kneebone J, Chisholm J, Bernal D, Skomal G (2013) The physiological effects of capture stress, recovery, and post-release survivorship of juvenile sand tigers (Carcharias taurus) caught on rod and reel. Fish Res 147:103–114
Kooijman SALM (2001) Quantitative aspects of metabolic organization; a discussion of concepts. Phil Trans R Soc B 356:331–349
Kooijman SALM (2010) Dynamic energy budget theory for metabolic organisation. Cambridge University Press, Cambridge
Kotwicki S, De Robertis A, von Szalay P, Towler R (2009) The effect of light intensity on the availability of walleye pollock (Theragra chalcogramma) to bottom trawl and acoustic surveys. Can J Fish Aquat Sci 66:983–994
Kuparinen A, Merila J (2007) Detecting and managing fisheries-induced evolution. Trends Ecol Evol 22:652–659
Kupschus S, Tremain D (2001) Associations between fish assemblages and environmental factors in nearshore habitats of a subtropical estuary. J Fish Biol 58:1383–1403
Ladich F, Collin SP, Moller P, Kapoor BG (2006) Communication in Fishes, Volumes 1 and 2. Science Publishers, Enfield
Loretz CA (2008) Extracellular calcium-sensing receptors in fishes. Comp Biochem Physiol 149:225–245
Lowe T, Brill R, Cousins K (2000) Blood O2-binding characteristics of bigeye tuna (Thunnus obesus), a high-energy-demand teleost that is tolerant of low ambient O2. Mar Biol 136:1087–1098
Lynch PD, Shertzer KW, Latour RJ (2012) Performance of methods used to estimate indices of abundance for highly migratory species. Fish Res 125–126:27–39
Magel C, Wakefield K, Targett N, Brill R (2007) Activity in the pallial nerve of knobbed (Busycon carica) and channeled (Busycotypus canaliculatum) whelks recorded during exposure of the osphradium to odorant solutions. Fish Bull 105:485–492
Maguire J-J, Neis B, Sinclair PR (1994) What are we managing anyway? The need for an interdisciplinary approach to managing fisheries ecosystems. Intern Council Explor Sea CM-1994/T:48
Mandelman JW, Farrington MA (2007) The physiological status and mortality associated with otter-trawl capture, transport, and captivity of an exploited elasmobranch, Squalus acanthias. ICES J Mar Sci 64:122–130
Mangel M, Stamps J (2001) Trade-offs between growth and mortality and the maintenance of individual variation in growth. Evol Ecol Res 3:583–593
Mandelman JW, Skomal GB (2009) Differential sensitivity to capture stress assessed by blood acid–base status in five carcharhinid sharks. J Comp Physiol B 179:267–277
Mangum CP, Hochachka PW (1998) New directions in comparative physiology and biochemistry: mechanisms, adaptations, and evolution. Physiol Biochem Zool 71:471–484
Marshall H, Field L, Afiadata A, Sepulveda C, Skomal G, Bernal D (2012) Hematological indicators of stress in longline-captured sharks. Comp Biochem Physiol A 162:121–129
Martin GR, Crawford R (2015) Reducing bycatch in gillnets: a sensory ecology perspective. Global Ecol Cons 3:28–50
Martin BT, Zimmer EI, Grimm V, Jager T (2012) Dynamic energy budget theory meets individual-based modelling: a generic and accessible implementation. Methods Ecol Evol 3:445–449
Mazur MM, Beauchamp DA (2003) A comparison of visual prey detection among species of piscivorous salmonids: effects of light and low turbidities. Environ Biol Fish 67:397–405
McKenzie DJ (2001) Effects of dietary fatty acids on the respiratory and cardiovascular physiology of fish. Comp Biochem Physiol A 128:607–621
Meka JM, Margraf FJ (2007) Using a bioenergetics model to assess growth reduction from catch-and-release fishing and hooking injury in rainbow trout, Oncorhynchus mykiss. Fish Manage Ecol 14:131–139
Metcalfe JD, Le Quesne WJF, Cheung WWL, Righton DA (2012) Conservation physiology for applied management of marine fish: an overview with perspectives on the role and value of telemetry. Philos Trans R Soc B Biol Sci 367:1746–1756
Miller JM (1997) Opening address of the third flatfish symposium. J Sea Res 37:183–186
Mooney TA, Au WWL, Nachtigall PE, Trippel EA (2007) Acoustic and stiffness properties of gillnets as they relate to small cetacean bycatch. ICES J Mar Sci 64:1–9
Moyes CD, Frugoso N, Musyl MK, Brill RW (2006) Predicting postrelease survival in large pelagic fish. Trans Am Fish Soc 135:1389–1397
Musyl MK, Brill RW, Curran DS et al (2011) Post-release survival, vertical and horizontal movements, and thermal niche partitioning in five species of pelagic sharks. Fish Bull 109:341–368
Naylor RL, Goldburg RJ, Primavera JH et al (2000) Effect of aquaculture on world fish supplies. Nature 405:1017–1024
Nearing J, Betka M, Quinn S, Hentschel H, Elger M, Baum M, Bai M, Chattopadyhay N, Brown EM, Herbert SC, Harris HW (2002) Polyvalent cation receptor proteins (CaRs) are salinity sensors in fish. Proc Natl Acad Sci USA 99:9231–9236
Neill WH, Miller JM, Van Der Veer HK, Winemiller KO (1994) Ecophysiology of marine fish recruitment: a conceptual framework for understanding interannual variability. Neth J Sea Res 32:135–152
Nisbet RM, Jusup M, Klanjscek T, Pecquerie L (2012) Integrating dynamic energy budget (DEB) theory with traditional bioenergetic models. J Exp Biol 215:892–902
Ohlberger J, Staaks G, Petzoldt T, Mehner T, Holker F (2008) Physiological specialization by thermal adaptation drives ecological divergence in a sympatric species pair. Evol Ecol Res 10:1173–1185
Olla BL, Davis MW, Rose C (2000) Differences in orientation and swimming of walleye Pollock Theragra chalcogramma in a trawl net under light and dark conditions: concordance between field and laboratory observations. Fish Res 44:261–266
Parmesan C (2006) Ecological and evolutionary responses to recent climate change. Ann Rev Ecol Evol Syst 37:637–669
Pauly D, Christensen V, Dalsgaard J, Froese R, Torres F (1998) Fishing down marine food webs. Science 279:860–863
Pelletier C, Hanson KC, Cooke SJ (2007) Do catch-and-release-guidelines from state and provincial fisheries agencies in North America conform to scientifically based best practices? Environ Manage 39:760–773
Perry AL, Low PJ, Ellis JR, Reynolds JR (2005) Climate change and distribution shifts in marine fishes. Science 308:1912–1915
Petitgas P, Rijnsdorp AD, Dickey-Collas M, Engelhard GH, Peck MA, Pinnegar JK, Drinkwater K et al (2013) Impacts of climate change on the complex life cycles of fish. Fish Oceanogr 22:121–139
Pitcher TJ, Lam ME (2010) Fishful thinking: rhetoric, reality, and the Sea before us. Ecol Soc 15:12
Pörtner HO, Farrell AP (2008) Physiology and climate change. Science 322:690–692
Pörtner HO, Peck MA (2010) Climate change effects on fishes and fisheries: towards a cause-and-effect understanding. J Fish Biol 77:1745–1779
Pörtner HO, Berdal B, Blust R et al (2001) Climate effects on growth performance, fecundity and recruitment in marine fish: developing a hypothesis for cause and effect relationships in Atlantic cod (Gadus morhua) and common eelpout (Zoarces viviparus). Cont Shelf Res 21:1975–1997
Pranovi F, Raicevich S, Franceschini G, Torricelli P, Giovanardi O (2001) Discard composition and damage to non-target species in the ‘‘rapido’’ trawl fishery. Mar Biol 139:863–875
Prince EP, Luo J, Goodyear CP et al (2010) Ocean scale hypoxia-based compression of Atlantic istiophorid billfishes. Fish Oceanogr 19:448–462
Raby GD, Donaldson MR, Hinch SG, Patterson DA, Lotto AG, Robichaud D, English KK, Willmore WW, Farrell AP, Davis MW, Cooke SJ (2012) Validation of reflex indicators for measuring vitality and predicting the delayed mortality of wild coho salmon bycatch released from fishing gears. J Appl Ecol 49:90–98
Ricklefs RE, Wikelski M (2002) The physiology/life-history nexus. Trends Ecol Evol 17:462–468
Roessig JM, Woodley CM, Cech JJ, Hansen LJ (2004) Effects of global climate change on marine and estuarine fishes. Rev Fish Biol Fish 14:215–275
Rosegrant MW, Cline SA (2003) Global food security: challenges and policies. Science 302:1917–1919
Rosenberger AE, Chapman LJ (2000) Respiratory characters of three haplochromine cichlid species: implications for persistence in wetland refugia. J Fish Biol 57:483–501
Rothschild BJ, Beamish RJ (2009) On the future of fisheries science. In: Beamish RJ, Rothschild BJ (eds) The future of fisheries science in North America, Fish & Fisheries Series, Springer Science + Business Media B.V. Proceedings of the AIFRB Symposium held June 2007, Halifax NS, pp 1–12
Rutz C, Hays G (2009) New frontiers in biologging science. Biol Lett 5:289–292
Schramski JR, Dell AI, Grady JM, Sibly RM, Brown JH (2015) Metabolic theory predicts whole-ecosystem properties. Proc Natl Acad Sci 112:2617–2622
Schreck CB, Scanlon PF (1977) Endocrinology in fisheries and wildlife: biology and management. Fisheries 2:20–30
Scott GR, Sloman KA (2004) The effects of environmental pollutants on complex fish behaviour: integrating behavioural and physiological indicators of toxicity. Aquat Toxicol 68:369–392
Seebacher F, Franklin CE (2012) Determining environmental causes of biological effects: the need for a mechanistic physiological dimension in conservation biology. Philos Trans R Soc B 367:1607–1614
Shultz AD, Murchie KJ, Griffith C, Cooke SJ, Danylchuk AJ, Goldberg TL, Suski CD (2011) Impacts of dissolved oxygen on the behavior and physiology of bonefish: implications for live release angling tournaments. J Exp Mar Biol Ecol 402:19–26
Sih A, Stamps J, Yang LH, McElreath R, Ramenofsky M (2010) Behavior as a key component of integrative biology in a human-altered world. Integr Comp Biol 50:934–944
Skomal G (2007) Evaluating the physiological and physical consequences of capture on post-release survivorship in large pelagic fishes. Fish Ecol Manage 14:81–89
Skulason S, Smith TB (1995) Resource polymorphisms in vertebrates. Trends Ecol Evol 10:366–370
Slabbekoorn H, Bouton N, van Opzeeland I, Coers A, ten Cate C, Popper AN (2010) A noisy spring: the impact of globally rising underwater sound levels on fish. Trends Ecol Evol 25:419–427
Sloman KA, Wilson RW, Balshine S (2006) Behavior and physiology fish physiology, vol 24. Academic Press, San Diego
Smith TD (2002) A history of fisheries and their science and management. In: Hart PJB, Reynolds JD (eds) Handbook of fish biology and fisheries, vol 2. Blackwell Publishing, Oxford, pp 61–83
Sousa T, Domingos T, Poggiale J-C, Kooijman SALM (2010) Dynamic energy budget theory restores coherence in biology. Phil Trans R Soc B 365:3413–3428
Southwood A, Fritsches K, Brill R, Swimmer Y (2008) Sound, chemical, and light detection in sea turtles and pelagic fishes: sensory-based approaches to bycatch reduction in longline fisheries. Endang Sp Res 5:225–238
Spicer JI, Gaston KJ (1999) Physiological diversity and its ecological implications. Blackwell Science, Oxford
Sumaila UR, Cheung WWL, Lam VWY, Pauly D, Herrick S (2011) Climate change impacts on the biophysics and economics of world fisheries. Nat Clim Change 1:449–456
Suski CD, Cooke SJ, Danylchuk AJ et al (2007) Physiological disturbance and recovery dynamics of bonefish (Albula vulpes), a tropical marine fish, in response to variable exercise and exposure to air. Comp Biochem Physiol A 148:664–673
Trippel EA (1999) Estimation of stock reproductive potential: history and challenges for Canadian Atlantic Gadoid stock assessments. J NW Atl Fish Sci 25:61–81
Ulltang Ø (1998) Explanations and predictions in fisheries science–problems and challenges in a historical and epistemological perspective. Fish Res 37:297–310
Utne-Palm AC (2002) Visual feeding of fish in a turbid environment: physical and behavioural aspects. Mar Freshw Behav Physiol 35:111–128
Videler JJ (1993) Fish swimming. Chapman and Hall, London
Videler JJ, Weihs D (1982) Energetic advantages of burst-and-coast swimming of fish at high speeds. J Exp Biol 97:169–178
Walther GR, Post E, Convey P et al (2002) Ecological responses to recent climate change. Nature 416:389–395
Wang JH, Fisler S, Swimmer Y (2010) Developing visual deterrents to reduce sea turtle bycatch in gillnet fisheries. Mar Ecol Progr Ser 408:241–250
Ward P, Myers RA (2005) Inferring the depth distribution of catchability for pelagic fishes and correcting for variations in the depth of longline fishing gear. Can J Fish Aquat Sci 62:1130–1142
Weissburg MJ, Browman HI (2005) Sensory biology: linking the internal and external ecologies of marine organisms. Mar Ecol Progr Ser 287:263–265
Wells RMG, Davie PS (1985) Oxygen binding by the blood and hematological effects of capture stress in two big gamefish: mako shark and striped marlin. Comp Biochem Physiol 81A:643–646
Welton JS, Beaumont WRC, Clarke RT (2002) The efficacy of air, sound, and bubble screens in deflecting Atlantic salmon, Salmo salar L., smolts in the River Frome UK. Fish Manage Ecol 9:11–18
West GB, Brown JH, Enquist BJ (1997) A general model for the origin of allometric scaling laws in biology. Science 276(7):122–126
Wirjoatmodo S, Pitcher TJ (1984) Flounders follow the tide to feed: evidence from ultrasonic tracking in an estuary. Est Coast Shelf Sci 19:231–242
Wood CM, Turner JD, Graham MS (1983) Why do fish die after severe exercise? J Fish Biol 22:189–201
Worm B, Hilborn R, Baum JK et al (2009) Rebuilding global fisheries. Science 325:578–585
Young JL, Bornik ZB, Marcotte ML, Charlie KN, Wagner GN, Hinch SG, Cooke SJ (2006) Integrating physiology and life history to improve fisheries management and conservation. Fish Fish 7:262–283
Acknowledgments
We thank A. Rosenberger and K. Polivka for their invitation to present this work at the 2012 National AFS meeting, which served as the gestalt of this manuscript. A.Z.H receives support from the NOAA Living Marine Resources Cooperative Science Center and the Educational Partnership in Climate Change and Sustainability. S.J.C. is supported by NSERC, the Canada Research Chairs Program, and a Bonefish and Tarpon Trust Research Fellowship. R.W.B. received support from the Behavioral Ecology Branch, National Marine Fisheries Service, and the Virginia Institute of Marine Science. This is research contribution 3480 from the Virginia Institute of Marine Science.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Horodysky, A.Z., Cooke, S.J. & Brill, R.W. Physiology in the service of fisheries science: Why thinking mechanistically matters. Rev Fish Biol Fisheries 25, 425–447 (2015). https://doi.org/10.1007/s11160-015-9393-y
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11160-015-9393-y