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Chemical modification studies of tryptophan, arginine and lysine residues in maize chloroplast ferredoxin:sulfite oxidoreductase

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Abstract

The ferredoxin-dependent sulfite reductase from maize was treated, in separate experiments, with three different covalent modifiers of specific amino acid side chains. Treatment with the tryptophan-modifying reagent, N-bromosuccinimide (NBS), resulted in a loss of enzymatic activity with both the physiological donor for the enzyme, reduced ferredoxin, and with reduced methyl viologen, a non-physiological electron donor. Formation of the 1:1 ferredoxin/sulfite reductase complex prior to treating the enzyme with NBS completely protected the enzyme against the loss of both activities. Neither the secondary structure, nor the oxidation-reduction midpoint potential (E m) values of the siroheme and [4Fe–4S] cluster prosthetic groups of sulfite reductase, nor the binding affinity of the enzyme for ferredoxin were affected by NBS treatment. Treatment of sulfite reductase with the lysine-modifying reagent, N-acetylsuccinimide, inhibited the ferredoxin-linked activity of the enzyme without inhibiting the methyl viologen-linked activity. Complex formation with ferredoxin protects the enzyme against the inhibition of ferredoxin-linked activity produced by treatment with N-acetylsuccinimide. Treatment of sulfite reductase with N-acetylsuccinimide also decreased the binding affinity of the enzyme for ferredoxin. Treatment of sulfite reductase with the arginine-modifying reagent, phenylglyoxal, inhibited both the ferredoxin-linked and methyl viologen-linked activities of the enzyme but had a significantly greater effect on the ferredoxin-dependent activity than on the reduced methyl viologen-linked activity. The effects of these three inhibitory treatments are consistent with a possible role for a tryptophan residue the catalytic mechanism of sulfite reductase and for lysine and arginine residues at the ferredoxin-binding site of the enzyme.

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Abbreviations

CD:

circular dichroism

E h :

ambient oxidation-reduction potential

E m :

oxidation-reduc-tion midpoint potential

FNR:

ferredoxin:NADP+ oxidoreductase

NBS:

N-bromosuccinimide

Tris:

tris (hydroxymethyl)amino-methane

References

  • T Akashi, T Matsumura, T Ideguchi, K Iwakiri, T Kawakatsu, I Taniguchi and T Hase, Comparison of the electrostatic binding sites on the surface of ferredoxin for two ferredoxin-dependent enzymes, ferredoxin-NADP+ reductase and sulfite reductase. J Biol Chem 274 (1999) 29399-29405

    Article  PubMed  CAS  Google Scholar 

  • C Bork, JD Schwenn and R Hell, Isolation and characterization of a gene for assimilatory sulfite reductase from Arabidopsis thaliana. Gene 212 (1998) 147-153

    Article  PubMed  CAS  Google Scholar 

  • CG Bowsher, DP Hucklesby and MJ Emes, Nitrite reduction and carbohydrate metabolism in plastids purified from roots of Pisum sativum L. Planta 177 (1989) 359-366

    Article  CAS  Google Scholar 

  • CG Bowsher, EL Boulton, J Rose, S Nayagam and MJ Emes, Reductant for glutamate synthase is generated by the oxidative pentose phosphate pathway in non-photosynthetic plastids. Plant J 2 (1992) 893-898

    Article  CAS  Google Scholar 

  • C Brunold and M Suter, Localization of enzymes of assimilatory sulfate reduction in pea roots. Planta 179 (1989) 228-234

    Article  CAS  Google Scholar 

  • JA Christner, E Münck, PA Janick and LM Siegel, Mössbauer spectroscopic studies of Escherichia coli sulfite reductase. Evidence for coupling between the siroheme and Fe4S4 cluster prosthetic groups. J Biol Chem 256 (1981) 2098-2101

    PubMed  CAS  Google Scholar 

  • BR Crane, LM Siegel and ED Getzoff, Sulfite reductase structure at 1.6 A: evolution and catalysis for reduction of inorganic anions. Science 270 (1995) 59-67

    Article  PubMed  CAS  Google Scholar 

  • BR Crane, LM Siegel and ED Getzoff, Structures of the siroheme- and Fe4S4-containing active center of sulfite reductase in different states of oxidation: heme activation via reduction-gated exogenous ligand exchange. Biochemistry 36 (1997a) 12101-12119

    Article  CAS  Google Scholar 

  • BR Crane, LM Siegel and ED Getzoff, Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products. Biochemistry 36 (1997b) 12120-12137

    Article  CAS  Google Scholar 

  • EP Day, J Peterson, JJ Bonvoisin, LJ Young, JO Wilkerson and LM Siegel, Magnetization of the sulfite and nitrite complexes of oxidized sulfite and nitrite reductases: EPR silent spin S=½ states. Biochemistry 27 (1988) 2126-2132

    Article  PubMed  CAS  Google Scholar 

  • MM Dose, M Hirasawa, S Kleis-SanFrancisco, EL Lew and DB Knaff, The ferredoxin-binding site of ferredoxin: nitrite oxidoreductase. Differential chemical modification of the free enzyme and its complex with ferredoxin. Plant Physiol 114 (1997) 1047-1053

    Article  PubMed  CAS  Google Scholar 

  • Hase T, Schürmann P and Knaff DB (2005) The interaction of ferredoxin with ferredoxin-dependent enzymes. In: Golbeck J (ed) Photosystem 1. Springer, Dordrecht, The Netherlands, in press.

  • M Hirasawa and DB Knaff, Interaction of ferredoxin-linked nitrite reductase with ferredoxin. Biochim Biophys Acta 830 (1985) 173-180

    CAS  Google Scholar 

  • M Hirasawa and DB Knaff, The effect of lysine and arginine-modifying reagents on spinach ferredoxin:nitrite oxidoreductase. Biochim Biophys Acta 1140 (1993a) 304-312

    Article  CAS  Google Scholar 

  • M Hirasawa and DB Knaff, The role of lysine and arginine residues at the ferredoxin-binding site of spinach glutamate synthase. Biochim Biophys Acta 1144 (1993b) 85-91

    Article  CAS  Google Scholar 

  • M Hirasawa, JM Boyer, KA Gray, DJ David and DB Knaff, The interaction of ferredoxin with chloroplast ferredoxin-linked enzymes. Biochim Biophys Acta 851 (1986) 23-28

    Article  CAS  Google Scholar 

  • M Hirasawa, JM Boyer, KA Gray, DJ Davis and DB Knaff, The interaction of ferredoxin-linked sulfite reductase with ferredoxin. FEBS Lett 221 (1987) 343-348

    Article  CAS  Google Scholar 

  • M Hirasawa, M Droux, KA Gray, JM Boyer, DJ Davis, BB Buchanan and DB Knaff, Ferredoxin-thioredoxin reductase: properties of its complex with ferredoxin. Biochim Biophys Acta 935 (1988) 1-8

    Article  CAS  Google Scholar 

  • M Hirasawa, G Tollin, Z Salamon and DB Knaff, Transient kinetic and oxidation–reduction studies of spinach ferredoxin:nitrite oxidoreductase. Biochim Biophys Acta 1185 (1994) 336-345

    Article  PubMed  CAS  Google Scholar 

  • M Hirasawa, MM Dose, S Kleis-SanFrancisco, JK Hurley, G Tollin and DB Knaff, A conserved tryptophan at the ferredoxin-binding site of ferredoxin:nitrite oxidoreductase. Arch Biochem Biophys 354 (1998a) 95-101

    Article  CAS  Google Scholar 

  • M Hirasawa, JK Hurley, Z Salamon, G Tollin, JL Markley, H Cheng, B Xia and DB Knaff, The role of aromatic and acidic amino acids in the electron transfer reaction catalyzed by spinach ferredoxin-dependent glutamate synthase. Biochim Biophys Acta 1363 (1998b) 134-146

    Article  CAS  Google Scholar 

  • M Hirasawa, M Nakayama, T Hase and DB Knaff, Oxidation-reduction properties of maize ferredoxin: sulfite oxidoreductase. Biochim Biophys Acta 1608 (2004) 140-148

    Article  PubMed  CAS  Google Scholar 

  • Hirasawa M, Kuznetsova S, SÉtif P, Mattioli T, Tripathy J, Kim S-K, Swany U, Wang M, Allen J and Knaff DB (2005) Structural, mechanistic and spectroscopic studies of spinach nitrite reductase. In: Proceedings of the 13th International Congress of Photosynthesis, 1: 825–826. Allen Press

  • PA Janick and LM Siegel, Electron paramagnetic resonance and optical spectroscopic evidence for interaction between siroheme and Fe4S4 prosthetic groups in Escherichia coli sulfite reductase hemoprotein subunit. Biochemistry 21 (1982) 3538-3547

    Article  PubMed  CAS  Google Scholar 

  • PA Janick and LM Siegel, Electron paramagnetic resonance and optical evidence for interaction between siroheme and Fe4S4 prosthetic groups in complexes of Escherichia coli sulfite reductase hemoprotein with added ligands. Biochemistry 22 (1983) 504-515

    Article  PubMed  CAS  Google Scholar 

  • J Kaufman, LD Spicer and LM Siegel, Proton NMR of Escherichia coli sulfite reductase: the unligated hemeprotein subunit. Biochemistry 32 (1993a) 2853-2867

    Article  CAS  Google Scholar 

  • J Kaufman, LM Siegel and LD Spicer, Proton NMR of Escherichia coli sulfite reductase: studies of the heme protein subunit with added ligands. Biochemistry 32 (1993b) 8782-8791

    Article  CAS  Google Scholar 

  • RJ Krueger and LM Siegel, Spinach siroheme enzymes: isolation and characterization of ferredoxin-sulfite reductase and comparison of properties with ferredoxin-nitrite reductase. Biochemistry 21 (1982a) 2892-2904

    Article  CAS  Google Scholar 

  • RJ Krueger and LM Siegel, Evidence for siroheme-Fe4S4 interaction in spinach ferredoxin-sulfite reductase. Biochemistry 21 (1982b) 2905-2909

    Article  CAS  Google Scholar 

  • T Leustek and K Saito, Sulfate transport and assimilation in plants. Plant Physiol 120 (1999) 637-644

    Article  PubMed  CAS  Google Scholar 

  • R Malkin, Photosystem I electron transfer reactions - Components and kinetics. In: DR Ort and CF Yocum (eds.) Advances in Photosynthesis, Oxygenic Photosynthesis: The Light Reactions. Dordrecht: The Netherlands, Kluwer Academic Publishers, (1996) pp. 313-332

    Google Scholar 

  • M Nakayama, T Akashi and T Hase, Plant sulfite reductase: molecular structure, catalytic function and interaction with ferredoxin. J Inorg Biochem 82 (2000) 27-32

    Article  PubMed  CAS  Google Scholar 

  • K Yonekura-Sakakibara, T Ashikari, Y Tanaka, T Kusumi and T Hase, Molecular characterization of tobacco sulfite reductase: enzyme purification, gene cloning, and gene expression analysis. J Biochem (Tokyo) 124 (1998) 615-621

    CAS  Google Scholar 

  • K Yonekura-Sakakibara, Y Onda, T Ashikari, Y Tanaka, T Kusumi and T Hase, Analysis of reductant supply systems for ferredoxin-dependent sulfite reductase in photosynthetic and nonphotosynthetic organs in maize. Plant Physiol 122 (2000) 887-894

    Article  PubMed  CAS  Google Scholar 

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Correspondence to David B. Knaff.

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Hirasawa, M., Nakayama, M., Kim, SK. et al. Chemical modification studies of tryptophan, arginine and lysine residues in maize chloroplast ferredoxin:sulfite oxidoreductase. Photosynth Res 86, 325–336 (2005). https://doi.org/10.1007/s11120-005-6966-y

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  • DOI: https://doi.org/10.1007/s11120-005-6966-y

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