Skip to main content
Log in

Ring current shifts in 19F-NMR of membrane proteins

  • Communication
  • Published:
Journal of Biomolecular NMR Aims and scope Submit manuscript

Abstract

Fluorine-19 NMR markers are attractive reporter groups for use in studies of complex biomacromolecular systems, in particular also for studies of function-related conformational equilibria and rate processes in membrane proteins. Advantages of 19F-NMR probes include high sensitivity of the 19F chemical shifts to variations in the non-covalent environment. Nonetheless, in studies of G protein-coupled receptors (GPCR) we encountered situations where 19F chemical shifts were not responsive to conformational changes that had been implicated by other methods. This prompted us to examine possible effects of aromatic ring current fields on the chemical shifts of 19F-NMR probes used in GPCRs. Analysis of previously reported 19F-NMR data on the β2-adrenergic receptor and mammalian rhodopsin showed that all 19F-labeling sites which manifested conformational changes are located near aromatic residues. Although ring current effects are small when compared to other known non-covalent effects on 19F chemical shifts, there is thus an indication that their contributions are significant when studying activation processes in GPCRs, since the observed activation-related 19F-NMR chemical shifts are comparable in size to the calculated ring current shifts. Considering the impact of ring current shifts may thus be helpful in identifying promising indigenous or engineered labeling sites for future 19F-NMR studies of GPCR activation, and novel information may be obtained on the nature of conformational rearrangements near the 19F-labels. It will then also be interesting to see if the presently indicated role of ring current shifts in membrane protein studies with 19F-NMR markers can be substantiated by a more extensive data base resulting from future studies.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

References

  • Bernstein HJ, Schneider WG, Pople JA (1956) The proton magnetic resonance spectra of conjugated aromatic hydrocarbons. Proc R Soc Lond A Math 236:515–528

    Article  ADS  Google Scholar 

  • Cobb SL, Murphy CD (2009) F-19 NMR applications in chemical biology. J Fluor Chem 130:132–143

    Article  Google Scholar 

  • Didenko T, Liu JJ, Horst R, Stevens RC, Wüthrich K (2013) Fluorine-19 NMR of integral membrane proteins illustrated with studies of GPCRs. Curr Opin Struct Biol 23:740–747

    Article  Google Scholar 

  • Gerig JT (1994) Fluorine NMR of proteins. Prog Nucl Magn Reson Spectr 26:293–370

    Article  Google Scholar 

  • Horst R, Liu JJ, Stevens RC, Wüthrich K (2013) Beta(2)-adrenergic receptor activation by agonists studied with 19F NMR spectroscopy. Angew Chem Int Ed 52:10762–10765

    Article  Google Scholar 

  • Johnson CE, Bovey FA (1958) Calculation of nuclear magnetic resonance spectra of aromatic hydrocarbons. J Chem Phys 29:1012–1014

    Article  ADS  Google Scholar 

  • Kim TH, Chung KY, Manglik A et al (2013) The role of ligands on the equilibria between functional states of a G protein-coupled receptor. J Am Chem Soc 135:9465–9474

    Article  Google Scholar 

  • Kitevski-LeBlanc JL, Prosser RS (2012) Current applications of F-19 NMR to studies of protein structure and dynamics. Prog Nucl Magn Reson Spectrosc 62:1–33

    Article  Google Scholar 

  • Klein-Seetharaman J, Getmanova EV, Loewen MC, Reeves PJ, Khorana HG (1999) NMR spectroscopy in studies of light-induced structural changes in mammalian rhodopsin: applicability of solution (19)F NMR. Proc Natl Acad Sci USA 96:13744–13749

    Article  ADS  Google Scholar 

  • Koradi R, Billeter M, Wüthrich K (1996) MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graph 14(51–55):29–32

    Google Scholar 

  • Kowalsky A (1962) Nuclear magnetic resonance studies of proteins. J Biol Chem 237:1807–1819

    Google Scholar 

  • Liu JJ, Horst R, Katritch V, Stevens RC, Wüthrich K (2012) Biased signaling pathways in beta2-adrenergic receptor characterized by 19F-NMR. Science 335:1106–1110

    Article  ADS  Google Scholar 

  • Manglik A, Kim TH, Masureel M et al (2015) Structural insights into the dynamic process of beta2-adrenergic receptor signaling. Cell 161:1101–1111

    Article  Google Scholar 

  • McConnell HM (1957) Theory of nuclear magnetic shielding in molecules I long-range dipolar shielding of protons. J Chem Phys 27:226–229

    Article  ADS  Google Scholar 

  • McDonald CC, Phillips WD (1967) Manifestations of the tertiary structures of proteins in high-frequency nuclear magnetic resonance. J Am Chem Soc 89:6332–6341

    Article  Google Scholar 

  • Perkins SJ, Wüthrich K (1979) Ring current effects in the conformation-dependent NMR chemical shifts of aliphatic protons in the basic pancreatic trypsin inhibitor. Biochim Biophys Acta 576:409–423

    Article  Google Scholar 

  • Pople JA (1956) Proton magnetic resonance of hydrocarbons. J Chem Phys 24:1111

    Article  ADS  MathSciNet  Google Scholar 

  • Rasmussen SGF, Choi HJ, Rosenbaum DM et al (2007) Crystal structure of the human beta(2) adrenergic G-protein-coupled receptor. Nature 450:383–384

    Article  ADS  Google Scholar 

  • Rasmussen SGF, Choi HJ, Fung JJ et al (2011) Structure of a nanobody-stabilized active state of the beta(2) adrenoceptor. Nature 469:175–180

    Article  ADS  Google Scholar 

  • Ring AM, Manglik A, Kruse AC, Enos MD, Weis WI, Garcia KC, Kobilka BK (2013) Adrenaline-activated structure of beta(2)-adrenoceptor stabilized by an engineered nanobody. Nature 502:575–579

    Article  ADS  Google Scholar 

  • Standfuss J, Xie G, Edwards PC, Burghammer M, Oprian DD, Schertler GF (2007) Crystal structure of a thermally stable rhodopsin mutant. J Mol Biol 372:1179–1188

    Article  Google Scholar 

  • Standfuss J, Edwards PC, D’Antona A, Fransen M, Xie G, Oprian DD, Schertler GF (2011) The structural basis of agonist-induced activation in constitutively active rhodopsin. Nature 471:656–660

    Article  ADS  Google Scholar 

  • Sykes BD, Hull WE (1978) Fluorine nuclear magnetic resonance studies of proteins. Methods Enzymol 49:270–295

    Article  Google Scholar 

  • Waugh JS, Fessenden RW (1957) Nuclear resonance spectra of hydrocarbons: the free electron model. J Am Chem Soc 79:846–849

    Article  Google Scholar 

  • Wilson ML, Dahlquist FW (1985) Membrane protein conformational change dependent on the hydrophobic environment. Biochemistry 24:1920–1928

    Article  Google Scholar 

  • Wüthrich K (1969) High-resolution proton nuclear magnetic resonance spectroscopy of cytochrome c. Proc Natl Acad Sci USA 63:1071–1078

    Article  ADS  Google Scholar 

  • Zou YZ, Weis WI, Kobilka BK (2012) N-terminal T4 lysozyme fusion facilitates crystallization of a G protein coupled receptor. PLoS One 7(10):e46039

    Article  ADS  Google Scholar 

Download references

Acknowledgments

The authors acknowledge financial support by the ShanghaiTech University, the Shanghai Municipal Government, and the “Users with Excellence” Project (2015HSC-UE012) of the Hefei Science Center, the Chinese Academy of Sciences. We thank Ms. Ya Yuan for a careful reading of the manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Kurt Wüthrich.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Liu, D., Wüthrich, K. Ring current shifts in 19F-NMR of membrane proteins. J Biomol NMR 65, 1–5 (2016). https://doi.org/10.1007/s10858-016-0022-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10858-016-0022-4

Keywords

Navigation