Skip to main content
Log in

Spatial and temporal genetic differentiation and effective population size of brown trout (Salmo trutta, L.) in small Danish rivers

  • Published:
Conservation Genetics Aims and scope Submit manuscript

Abstract

The spatial and temporal genetic structure of brown trout populations from three small tributaries of Lake Hald, Denmark, was studied using analysis of variation at eight microsatellite loci. From two of the populations temporal samples were available, separated by up to 13 years (3.7 generations). Significant genetic differentiation was observed among all samples, however, hierarchical analysis of molecular variance (AMOVA) showed that differentiation among populations accounted for a non-significant amount of the genetic differentiation, whereas differentiation among temporal samples within populations was highly significant (0.0244, P<0.001). Estimates of effective population size (N e) using a maximum-likelihood based implementation of the temporal method, yielded small values (N e ranging from 33 to 79). When a model was applied that allows for migration among populations, N e estimates were even lower (24–54), and migration rates were suggested to be high (0.13–0.36). All samples displayed a clear signal of a recent bottleneck, probably stemming from a period of unfavourable conditions due to organic pollution in the 1970–1980’s. By comparison to other estimates of N e in brown trout, Lake Hald trout represent a system of small populations linked by extensive gene flow, whereas other populations in larger rivers exhibit much higher N e values and experience lower levels of immigration. We suggest that management considerations for systems like Lake Hald brown trout should focus both on a regional scale and at the level of individual populations, as the future persistence of populations depends both on maintaining individual populations and ensuring sufficient migration links among these populations.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Carlsson J, Olsén KH, Nilsson J, Øverli Ø, Stabell OB (1999) Microsatellites reveal fine-scale genetic structure in stream-living brown trout. J. Fish. Biol. 55: 1290–1303

    Article  CAS  Google Scholar 

  • El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theor. Appl. Genet. 92: 832–839

    Article  Google Scholar 

  • Estoup A, Largiader CR, Perrot E, Chourrout D (1996) Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes. Mol. Mar. Biol. Biotechnol. 5: 295–298

    CAS  Google Scholar 

  • Estoup A, Presa P, Krieg F, Vaiman D, Guyomard R (1993) (CT)n and (GT)n microsatellites: a new class of genetic markers for Salmo trutta L. (brown trout). Heredity 71: 488–496

    PubMed  CAS  Google Scholar 

  • Frankham R, Ballou JD, Briscoe DA (2002) Introduction to conservation genetics. Cambridge University Press, Cambridge, UK

    Google Scholar 

  • Garnier-Gere P, Dillmann C (1992) A computer-program for testing pairwise linkage disequilibria in subdivided populations. J. Hered. 83: 239

    PubMed  CAS  Google Scholar 

  • Garza JC, Willamson EG (2001) Detection of reduction in population size using data from microsatellite loci. Mol. Ecol. 10: 305–318

    Article  PubMed  CAS  Google Scholar 

  • Goudet J (1995) FSTAT (version 1.2): a computer program to calculate F-stastistics. J. Hered. 86: 485–486

    Google Scholar 

  • Goudet J, Raymond M, Demeeus T, and Rousset F (1996) Testing differentiation in diploid populations. Genetics 144: 1933–1940

    PubMed  CAS  Google Scholar 

  • Guo SW, Thompson EA (1992) Performing the exact test of Hardy–Weinberg proportion for multiple alleles. Biometrics 48: 361–372

    Article  PubMed  CAS  Google Scholar 

  • Hansen MM (2002) Estimating the long-term effects of stocking domesticated trout into wild brown trout (Salmo trutta) populations: an approach using microsatellite DNA analysis of historical and contemporary samples. Mol. Ecol. 11: 1003–1015

    Article  PubMed  CAS  Google Scholar 

  • Hansen MM, Loeschcke V (1996) Genetic differentiation among Danish brown trout populations, as detected by RFLP analysis of PCR amplified mitochondrial DNA segments. J. Fish. Biol. 48: 422–436

    CAS  Google Scholar 

  • Hansen MM, Ruzzante DE, Nielsen EE, Bekkevold D, Mensberg KLD (2002) Long-term effective population sizes, temporal stability of genetic composition and potential for local adaptation in anadromous brown trout (Salmo trutta) populations. Mol. Ecol. 11: 2523–2535

    Article  PubMed  Google Scholar 

  • Jorde PE, Ryman N (1996) Demographic genetics of brown trout (Salmo trutta) and estimation of effective population size from temporal change of allele frequencies. Genetics 143: 1369–1381

    PubMed  CAS  Google Scholar 

  • Kalinowski ST, Waples RS (2002) Relationship of effective to census size in fluctuating populations. Conserv. Biol. 16: 129–136

    Article  Google Scholar 

  • Laikre L, Järvi T, Johansson L, Palm S, Rubin JF, Glimsäter CE, Landergren P, Ryman N (2002) Spatial and temporal population structure of sea trout at the Island of Gotland, Sweden, delineated from mitochondrial DNA. J. Fish. Biol. 60: 49–71

    Article  CAS  Google Scholar 

  • Larsen LK (1984) Populationsdynamiske undersøgelser over ørred (Salmo trutta) og regnbueørred (Salmo gairdnerii) i tilløb til Hald sø. M.Sc. thesis, University of Aarhus, Denmark

  • Nielsen EE, Hansen MM, Loeschcke V (1999) Genetic variation in time and space: Microsatellite analysis of extinct and extant populations of atlantic salmon. Evolution 53: 261–268

    Article  Google Scholar 

  • O’Reilly PT, Hamilton LC, McConnell SK, Wright JM (1996) Rapid analysis of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellite. Can. J. Fish. Aquat. Sci. 53: 2292–2298

    Article  CAS  Google Scholar 

  • Østergaard S, Hansen MM, Loeschcke V, Nielsen EE (2003) Long-term temporal changes of genetic composition in brown trout (Salmo trutta L.) populations inhabiting an unstable environment. Mol. Ecol. 12: 3123—3135

    Article  PubMed  Google Scholar 

  • Palm S, Dannewitz J, Järvi T, Petersson E, Prestegaard T, Ryman N (2003) Lack of molecular genetic divergence between sea-ranched and wild sea trout (Salmo trutta). Mol. Ecol. 12: 2057–2071

    Article  PubMed  CAS  Google Scholar 

  • Raymond M, Rousset F (1995) GENEPOP (version 1.2.): a population genetics software for exact tests and ecumenicism. J. Hered. 86: 248–249

    Google Scholar 

  • Rice WR (1989) Analyzing tables of statistical tests. Evolution 43: 223–225

    Article  Google Scholar 

  • Ruzzante DE, Hansen MM, Meldrup D (2001) Distribution of individual inbreeding coefficients, relatedness and influence of stocking on native anadromous brown trout (Salmo trutta) population structure. Mol. Ecol. 10: 2107–2128

    Article  PubMed  CAS  Google Scholar 

  • Ryman N (1983) Patterns of distribution of biochemical genetic variation in salmonids: Differences between species. Aquaculture 33: 1–21

    Article  Google Scholar 

  • Schneider S, Kueffer J-M, Roessli D, Excoffier L (1997) Arlequin, Version 1.1. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland

    Google Scholar 

  • Slettan A, Olsaker I, Lie Ø (1995) Atlantic salmon, Salmo salar, microsatellites at the SSOSL25, SSOSL85, SSOSL311, SSOSL417 loci. Anim. Genet. 26: 281–282

    PubMed  CAS  Google Scholar 

  • Slettan A, Olsaker I, Lie Ø (1996) Polymorphic Atlantic salmon, Salmo salar L., microsatellites at the SSOSL438, SSOSL439 and SSOSL444 loci. Anim. Genet. 27: 57–64

    Article  PubMed  CAS  Google Scholar 

  • Taggart JB, Hynes RA, Prodöhl PA, Ferguson A (1992) A simplified protocol for routine total DNA isolation from salmonid fishes. J. Fish. Biol. 40: 963–965

    Article  CAS  Google Scholar 

  • Tessier N, Bernatchez L (1999) Stability of population structure and genetic diversity across generations assessed by microsatellites among sympatric populations of landlocked Atlantic salmon (Salmo salar L.). Mol. Ecol. 8: 169–179

    Article  Google Scholar 

  • Wang J, Whitlock MC (2003) Estimating effective population size and migration rates from genetic samples over space and time. Genetics 163: 429–446

    PubMed  CAS  Google Scholar 

  • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38: 1358–1370

    Article  Google Scholar 

Download references

Acknowledgements

LFJ thanks the International School of Biodiversity Sciences (ISOBIS) for funding, and MMH acknowledges funding from the Danish Natural Science Research Council (21-04-0045). Two anonymous reviewers provided helpful comments and suggestions.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Lasse F. Jensen.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Jensen, L.F., Hansen, M.M., Carlsson, J. et al. Spatial and temporal genetic differentiation and effective population size of brown trout (Salmo trutta, L.) in small Danish rivers. Conserv Genet 6, 615–621 (2005). https://doi.org/10.1007/s10592-005-9014-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10592-005-9014-8

Key words

Navigation