Skip to main content
Log in

Mutational analysis of two highly conserved motifs in the silencing suppressor encoded by tomato spotted wilt virus (genus Tospovirus, family Bunyaviridae)

  • Brief Report
  • Published:
Archives of Virology Aims and scope Submit manuscript

Abstract

Tospoviruses cause serious economic losses to a wide range of field and horticultural crops on a global scale. The NSs gene encoded by tospoviruses acts as a suppressor of host plant defense. We identified amino acid motifs that are conserved in all of the NSs proteins of tospoviruses for which the sequence is known. Using tomato spotted wilt virus (TSWV) as a model, the role of these motifs in suppressor activity of NSs was investigated. Using site-directed point mutations in two conserved motifs, glycine, lysine and valine/threonine (GKV/T) at positions 181-183 and tyrosine and leucine (YL) at positions 412-413, and an assay to measure the reversal of gene silencing in Nicotiana benthamiana line 16c, we show that substitutions (K182 to A, and L413 to A) in these motifs abolished suppressor activity of the NSs protein, indicating that these two motifs are essential for the RNAi suppressor function of tospoviruses.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

References

  1. Adkins S (2000) Tomato spotted wilt virus-positive steps towards negative success. Mol Plant Pathol 1:151–157

    Article  CAS  PubMed  Google Scholar 

  2. Bag S, Mitter N, Eid S, Pappu HR (2012) Genetic complementation between two tospoviruses facilitates the systemic movement of a plant virus silencing suppressor in an otherwise restrictive host. PLoS One 7:e44803

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  3. Bernstein E, Caudy AA, Hammond SM, Hannon GJ (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409:363–366

    Article  CAS  PubMed  Google Scholar 

  4. Burgyan J, Halved Z (2011) Viral suppressors of RNA silencing. Trends Plant Sci 16:265–272

    Article  CAS  PubMed  Google Scholar 

  5. Cheng HW, Chen KC, Raja JAJ, Li JX, Yen SD (2013) An efficient tag derived from the common epitope of tospoviral NSs proteins for monitoring recombinant proteins expressed in both bacterial and plant systems. J Biotechnol 164:510–519

    Article  CAS  PubMed  Google Scholar 

  6. Cristea IM, Rozjabek H, Molloy KR, Karki S, White LL, Rice CM, Rout MP, Chait BT, MacDonald MR (2010) Host factors associated with the Sindbis virus RNA-dependent RNA polymerase: role for G3BP1 and G3BP2 in virus replication. J Virol 84:6720–6732

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  7. Deleris A, Gallego-Bartolome J, Bao J, Kasschau KD, Carrington JC, Voinnet O (2006) Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313:68–71

    Article  CAS  PubMed  Google Scholar 

  8. Derry JJ, Richard S, Valderrama Carvajal H, Ye X, Vasioukhin V, Cochrane AW, Chen T, Tyner AL (2000) Sik (BRK) phosphorylates Sam68 in the nucleus and negatively regulates its RNA binding ability. Mol Cell Biol 20:6114–6126

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  9. Díaz-Pendon JA, Ding SW (2008) Direct and indirect roles of viral suppressors of RNA silencing in pathogenesis. Annu Rev Phytopathol 46:303–326

    Article  PubMed  Google Scholar 

  10. Duan CG, Fang YY, Zhou BJ, Zhao JH, Hou WN, Zhu H, Ding SW, Guo HS (2012) Suppression of Arabidopsis ARGONAUTE1-mediated slicing, transgene-induced RNA silencing, and DNA methylation by distinct domains of the Cucumber mosaic virus 2b protein. Plant Cell 24:259–274

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  11. Gleave AP (1992) A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome. Plant Mol Biol 20:1203–1207

    Article  CAS  PubMed  Google Scholar 

  12. Goldbach R, Peters D (1996) Molecular and biological aspects of Tospoviruses. In: Elliott RM (ed) The Bunyaviridae. Plenum Press, New York, pp 129–157

    Chapter  Google Scholar 

  13. Hamilton AJ, Baulcombe DC (1999) A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286:950–952

    Article  CAS  PubMed  Google Scholar 

  14. Lakatos L, Csorba T, Pantaleo V, Chapman EJ, Carrington JC, Liu YP, Dolja VV, Calvino LF, López-Moya JJ, Burgyán J (2006) Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO J 25:2768–2780

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  15. Lokesh B, Rashmi PR, Amruta BS, Srisathiyanarayanan D, Murthy MR, Savithri HS (2010) NSs encoded by groundnut bud necrosis virus is a bifunctional enzyme. PLoS One 5:e9757

    Article  PubMed Central  PubMed  Google Scholar 

  16. Luna AP, Morilla G, Voinnet O, Bejarano ER (2012) Functional analysis of gene-silencing suppressors from tomato yellow leaf curl disease viruses. Mol Plant Microbe Interact 25:1294–1306

    Article  CAS  PubMed  Google Scholar 

  17. Macdonald A, Mazaleyrat S, McCormick C, Street A, Burgoyne NJ, Jackson RM, Cazeaux V, Shelton H, Saksela K, Harris M (2005) Further studies on hepatitis C virus NS5A-SH3 domain interactions: identification of residues critical for binding and implications for viral RNA replication and modulation of cell signaling. J Gen Virol 86:1035–1044

    Article  CAS  PubMed  Google Scholar 

  18. Mandal B, Jain RK, Krishnareddy M, Krishna Kumar NK, Ravi KS, Pappu HR (2012) Emerging problems of Tospoviruses (Bunyaviridae) and their management in the Indian subcontinent. Plant Dis 96:468–479

    Article  Google Scholar 

  19. Margaria P, Ciuffo M, Pacifico D, Turina M (2007) Evidence that the nonstructural protein of Tomato spotted wilt virus is the avirulence determinant in the interaction with resistant pepper carrying the Tsw gene. Mol Plant Microbe Interact 20:547–558

    Article  CAS  PubMed  Google Scholar 

  20. Moyer JW (1999) Tospoviruses (Bunyaviridae). In: Webster R, Granoff A (eds) Encyclopedia of virology. Academic Press, London, pp 1803–1807

    Chapter  Google Scholar 

  21. Pappu HR (2008) Tomato spotted wilt virus (Bunyaviridae). In: Mahy BWJ, Regenmortel MHV (eds) Encyclopedia of virology, 3rd edn. Elsevier Ltd, Oxford, pp 133–138

    Chapter  Google Scholar 

  22. Pappu HR, Jones RA, Jain RK (2009) Global status of tospovirus epidemics in diverse cropping systems: successes achieved and challenges ahead. Virus Res 141:219–236

    Article  CAS  PubMed  Google Scholar 

  23. Park GS, Morris KL, Hallett RG, Bloom ME, Best SM (2007) Identification of residues critical for the interferon antagonist function of Langat virus NS5 reveals a role for the RNA-dependent RNA polymerase domain. J Virol 81:6936–6946

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  24. Pfannkuche A, Büther K, Karthe J, Poenisch M, Bartenschlager R, Trilling M, Hengel H, Willbold D, Häussinger D, Bode JG (2011) c-Src is required for complex formation between the hepatitis C virus-encoded proteins NS5A and NS5B: a prerequisite for replication. Hepatology 53:1127–1136

    Article  CAS  PubMed  Google Scholar 

  25. Qu F, Morris TJ (2002) Efficient infection of Nicotiana benthamiana by Tomato bushy stunt virus is facilitated by the coat protein and maintained by p19 through suppression of gene silencing. Mol Plant Microbe Interact 15:193–202

    Article  CAS  PubMed  Google Scholar 

  26. Ruiz MT, Voinnet O, Baulcombe DC (1998) Initiation and maintenance of virus-induced gene silencing. Plant Cell 10:937–946

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  27. Scholthof KB, Adkins S, Czosnek H, Palukaitis P, Jacquot E, Hohn T, Hohn B, Saunders K, Candresse T, Ahlquist P, Hemenway C, Foster GD (2011) Top 10 plant viruses in molecular plant pathology. Mol Plant Pathol 9:938–954

    Article  Google Scholar 

  28. Schnettler E, Hemmes H, Huismann R, Goldbach R, Prins M, Kormelink R (2010) Diverging affinity of Tospovirus RNA silencing suppressor proteins, NSs, for various RNA duplex molecules. J Virol 84:11542–11554

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  29. Sherwood JL, German TL, Moyer JW, Ullman DE (2003) Tomato spotted wilt. Plant Health Instr. doi:10.1094/2003-0613-02

    Google Scholar 

  30. Sin S-H, McNulty BC, Kennedy GG, Moyer JW (2005) Viral genetic determinants for thrips transmission of tomato spotted wilt virus. Proc Natl Acad Sci USA 102:5168–5173

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  31. Taylor SJ, Shalloway D (1994) An RNA-binding protein associated with Src through its SH2 and SH3 domains in mitosis. Nature 368:867–871

    Article  CAS  PubMed  Google Scholar 

  32. Takeda A, Sugiyama K, Nagano H, Mori M, Kaido M, Mise K, Tsuda S, Okuno T (2002) Identification of a novel RNA silencing suppressor, NSs protein of Tomato spotted wilt virus. FEBS Lett 532:75–79

    Article  CAS  PubMed  Google Scholar 

  33. Tsompana M, Moyer JW (2008) Tospoviruses. In: Mahy BWJ, Regenmortel MHV (eds) Encyclopedia of virology, 3rd edn. Elsevier Ltd, Oxford, pp 157–162

    Chapter  Google Scholar 

  34. Turina M, Tavella L, Ciuffo M (2012) Tospoviruses in the mediterranean area. Adv Virus Res 84:403–437

    Article  PubMed  Google Scholar 

  35. Ullman DE, Meideros R, Campbell LR, Whitfield AE, Sherwood JL, German TL (2002) Thrips as vectors of tospoviruses. Adv Bot Res 36:113–143

    Article  CAS  Google Scholar 

  36. Vaistij FE, Jones L, Baulcombe DC (2002) Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase. Plant Cell 14:857–867

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  37. Vance V, Vaucheret H (2001) RNA silencing in plants—defense and counterdefense. Science 292:2277–2280

    Article  CAS  PubMed  Google Scholar 

  38. Whitfield AE, Ullman DE, German TL (2005) Tospovirus–thrips interactions. Annu Rev Phytopathol 43:459–489

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

This work was supported by the WSU Agricultural Research Center, PPNS No. 0627, Department of Plant Pathology, College of Agricultural, Human and Natural Resource Sciences, Agricultural Research Center, Project # WNPO 0545, Washington State University, Pullman, WA, 99164-6430, USA. HRP’s visit to Instituto Virologia Vegetale, CNR, Turin, Italy, was supported by a fellowship from the OECD under the Cooperative Research Program.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hanu R. Pappu.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOC 190 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Zhai, Y., Bag, S., Mitter, N. et al. Mutational analysis of two highly conserved motifs in the silencing suppressor encoded by tomato spotted wilt virus (genus Tospovirus, family Bunyaviridae). Arch Virol 159, 1499–1504 (2014). https://doi.org/10.1007/s00705-013-1928-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-013-1928-8

Keywords

Navigation