Abstract
The use of microalgae for wastewater treatment has been proposed as a cost-effective method to produce biofuels while remediating waste streams. This study examined the microalgae biomass production rate, wastewater treatment efficiency, and prokaryotic organism microbiome associated with microalgae Chlorella sorokiniana cultivated on anaerobic digestate effluent. Final microalgae biomass concentrations from nine photobioreactors were highly variable and had values that ranged between 0.14 g/L and 0.90 g/L. Nutrient removal efficiencies for TN (total nitrogen), N-NH4 (ammonium nitrogen), and COD (chemical oxygen demand) ranged from 34% to 67%, 65% to 97%, and−60% to 14%, respectively. Analysis of individual OTUs (operational taxonomic units) from the microbial community revealed that microalgae biomass concentrations were significantly correlated with the relative abundance of OTUs in the genus Pusillimonas. Predictive metagenomic analyses identified additional correlations associated with biomass production and nutrient removal. These results suggest that the microbial community present during microalgae cultivation on wastewater can impact the performance of the system for biomass production and wastewater treatment.
Similar content being viewed by others
References
Abdel-Raouf N, Al-Homaidan A, Ibraheem I (2012) Microalgae and wastewater treatment. Saudi J Biol Sci 19(3):257–275
Alcántara C, Domínguez JM, García D, Blanco S, Pérez R, García-Encina PA, Muñoz R (2015) Evaluation of wastewater treatment in a novel anoxic–aerobic algal–bacterial photobioreactor with biomass recycling through carbon and nitrogen mass balances. Bioresour Technol 191:173–186
Arndt D, Xia J, Liu Y, Zhou Y, Guo AC, Cruz JA, Sinelnikov I, Budwill K, Nesbø CL, Wishart DS (2012) METAGENassist: a comprehensive web server for comparative metagenomics. Nucleic Acids Res 40(W1):W88–W95
Babatsouli P, Fodelianakis S, Paranychianakis N, Venieri D, Dialynas M, Kalogerakis N (2015) Single stage treatment of saline wastewater with marine bacterial–microalgae consortia in a fixed-bed photobioreactor. J Hazard Mater 292:155–163
Berland B, Bianchi M, Maestrini S (1969) Etude des bactéries associées aux Algues marines en culture. Mar Biol 2(4):350–355
Box GE, Cox DR (1964) An analysis of transformations. J R Stat Soc Ser B Methodol:211-252
Braker G, Schwarz J, Conrad R (2010) Influence of temperature on the composition and activity of denitrifying soil communities. FEMS Microbiol Ecol 73(1):134–148
Bray JR, Curtis JT (1957) An ordination of the upland forest communities of southern Wisconsin. Ecol Monogr 27(4):325–349. https://doi.org/10.2307/1942268
Busse HJ, Auling G (2015) Achromobacter. Bergey's Manual of Systematics of Archaea and Bacteria:1-14
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7(5):335–336
Carney LT, Reinsch SS, Lane PD, Solberg OD, Jansen LS, Williams KP, Trent JD, Lane TW (2014) Microbiome analysis of a microalgal mass culture growing in municipal wastewater in a prototype OMEGA photobioreactor. Algal Res 4:52–61
Chróst RJ (1975) Inhibitors produced by algae as an ecological factor affecting bacteria in water ecosystems. Acta Microbiol Pol 7:125–133
Cole JJ (1982) Interactions between bacteria and algae in aquatic ecosystems. Annu Rev Ecol Syst 13(1):291–314
Covarrubias SA, de Bashan LE, Moreno M, Bashan Y (2012) Alginate beads provide a beneficial physical barrier against native microorganisms in wastewater treated with immobilized bacteria and microalgae. Appl Microbiol Biotechnol 93(6):2669–2680
Croft MT, Lawrence AD, Raux-Deery E, Warren MJ, Smith AG (2005) Algae acquire vitamin B12 through a symbiotic relationship with bacteria. Nature 438(7064):90–93
Dalsgaard T, Bak F (1994) Nitrate reduction in a sulfate-reducing bacterium, Desulfovibrio desulfuricans, isolated from rice paddy soil: sulfide inhibition, kinetics, and regulation. Appl Environ Microbiol 60(1):291–297
Davis R, Kinchin C, Markham J, Tan E, Laurens L, Sexton D, Knorr D, Schoen P, Lukas J (2014) Process design and economics for the conversion of algal biomass to biofuels: algal biomass fractionation to lipid-and carbohydrate-derived fuel products. National Renewable Energy Lab.(NREL), Golden, CO (United States)
de Bashan LE, Trejo A, Huss VA, Hernandez J-P, Bashan Y (2008a) Chlorella sorokiniana UTEX 2805, a heat and intense, sunlight-tolerant microalga with potential for removing ammonium from wastewater. Bioresour Technol 99(11):4980–4989
de Bashan LE, Antoun H, Bashan Y (2008b) Involvement of indole-3-acetic acid produced by the growth-promoting bacterium Azospirillum spp. in promoting growth of Chlorella vulgaris. J Phycol 44(4):938–947
del Mar Morales-Amaral, M, Gómez-Serrano, C, Acién, FG, Fernández-Sevilla, JM, Molina-Grima, E (2015) Production of microalgae usingcentrate from anaerobic digestion as the nutrient source. Algal Res 9:297-305.
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72(7):5069–5072
DeWeerd KA, Mandelco L, Tanner RS, Woese CR, Suflita JM (1990) Desulfomonile tiedjei gen. nov. and sp. nov., a novel anaerobic, dehalogenating, sulfate-reducing bacterium. Arch Microbiol 154(1):23–30
Dixon P (2003) VEGAN, a package of R functions for community ecology. J Veg Sci 14(6):927–930
DOE (2016) National Algal Biofuels Technology Review. In: Barry A, Wolfe A, English C, Ruddick C, Lambert D (eds) National Algal Biofuels Technology Roadmap. U.S. Department of Energy, Office of Energy Efficiency and Renewable Energy, Bioenergy Technologies Office, p 212
F.R.S. KP (1901) LIII. On lines and planes of closest fit to systems of points in space. Lond Edinb Dubl Phil Mag 2(11):559–572. https://doi.org/10.1080/14786440109462720
Farnelid H, Tarangkoon W, Hansen G, Hansen PJ, Riemann L (2010) Putative N2-fixing heterotrophic bacteria associated with dinoflagellate–Cyanobacteria consortia in the low-nitrogen Indian Ocean. Aquat Microb Ecol 61(2):105–117
Ferrell J, Sarisky-Reed V (2010) National Algal Biofuels Technology Roadmap. In: Fishman D, Majumdar R, Morello J, Pate R, Yang J (eds) National Algal Biofuels Technology Roadmap. U.S. Department of Energy, Office of Energy Efficiency and Renewable Energy, Biomass Program, p 140
Fisher RA (1919) XV.—The correlation between relatives on the supposition of Mendelian inheritance. Earth Env Sci T R SO 52(2):399–433
Goodrich JK, Di Rienzi SC, Poole AC, Koren O, Walters WA, Caporaso JG, Knight R, Ley RE (2014) Conducting a microbiome study. Cell 158(2):250–262
Hanshew AS, Mason CJ, Raffa KF, Currie CR (2013) Minimization of chloroplast contamination in 16S rRNA gene pyrosequencing of insect herbivore bacterial communities. J Microbiol Methods 95(2):149–155
Higgins BT (2014) Co-culturing green algae with bacteria for enhanced growth and production of biofuel precursors. University of California, Davis
Higgins BT, VanderGheynst JS (2014) Effects of Escherichia coli on mixotrophic growth of Chlorella minutissima and production of biofuel precursors. PLoS One 9(5):e96807
Higgins BT, Paddock MB, Staley S, Ceballos SJ, VanderGheynst JS (2017) Modeling of photosynthetic aeration for energy-efficient wastewater treatment and reduced greenhouse gas emissions. In: 2017 ASABE Annual International Meeting, American Society of Agricultural and Biological Engineers
Higgins BT, Gennity I, Fitzgerald PS, Ceballos SJ, Fiehn O, VanderGheynst JS (2018) Algal–bacterial synergy in treatment of winery wastewater. npj Clean Water 1(1):6
Holmes B, Paddock MB, VanderGheynst JS, Higgins BT (2019) Algal photosynthetic aeration increases the capacity of bacteria to degrade organics in wastewater. Biotechnol Bioeng 0(ja) doi:https://doi.org/10.1002/bit.27172
Jin L, Ko S-R, Cui Y, Lee CS, Oh H-M, Ahn C-Y, Lee H-G (2017) Pusillimonas caeni sp. nov., isolated from a sludge sample of a biofilm reactor. Antonie Van Leeuwenhoek 110(1):125–132
Jolliffe I (2011) Principal Component Analysis. In: Lovric M (ed) International Encyclopedia of Statistical Science. Springer, Berlin, pp 1094–1096
Jones KJ, Moore K, Sambles C, Love J, Studholme DJ, Aves SJ (2016) Draft genome sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 isolated from consortium with the hydrocarbon-producing alga Botryococcus braunii. Genome Announc 4(1):e01527–e01515
Joye SB, Hollibaugh JT (1995) Influence of sulfide inhibition of nitrification on nitrogen regeneration in sediments. Science 270(5236):623–625
Kim Y-J, Kim MK, Im W-T, Srinivasan S, Yang D-C (2010) Parapusillimonas granuli gen. nov., sp. nov., isolated from granules from a wastewater-treatment bioreactor. Int J Syst Evol Microbiol 60(6):1401–1406
Kim B-H, Ramanan R, Cho D-H, Oh H-M, Kim H-S (2014) Role of Rhizobium, a plant growth promoting bacterium, in enhancing algal biomass through mutualistic interaction. Biomass Bioenergy 69:95–105
Kong M, Chan K (1979) A study on the bacterial flora isolated from marine algae. Bot Mar 22(2):83–98
Krustok I, Truu J, Odlare M, Truu M, Ligi T, Tiirik K, Nehrenheim E (2015) Effect of lake water on algal biomass and microbial community structure in municipal wastewater-based lab-scale photobioreactors. Appl Microbiol Biotechnol 99(15):6537–6549
Kutner MH, Nachtsheim CJ, Neter J, Li W (2013) Applied Linear Statistical Models, 5 edn. McGraw-Hill, New York
Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Thurber RLV, Knight R (2013) Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol 31(9):814
Leejeerajumnean A, Ames J, Owens J (2000) Effect of ammonia on the growth of Bacillus species and some other bacteria. Lett Appl Microbiol 30(5):385–389
Li YL, Fan XR, Shen QR (2008) The relationship between rhizosphere nitrification and nitrogen-use efficiency in rice plants. Plant Cell Environ 31(1):73–85
Li P, Wang L, Feng L (2013) Characterization of a novel Rieske-type alkane monooxygenase system in Pusillimonas sp. T7-7. J Bacteriol:JB. 02107-12
Marcilhac C, Sialve B, Pourcher A-M, Ziebal C, Bernet N, Béline F (2015) Control of nitrogen behaviour by phosphate concentration during microalgal-bacterial cultivation using digestate. Bioresour Technol 175:224–230
Osundeko O, Ansolia P, Gupta SK, Bag P, Bajhaiya AK (2019) Promises and challenges of growing microalgae in wastewater water conservation, recycling and reuse: issues and challenges. Springer, pp 29-53
Padhi SK, Maiti NK (2017) Molecular insight into the dynamic central metabolic pathways of Achromobacter xylosoxidans CF-S36 during heterotrophic nitrogen removal processes. J Biosci Bioeng 123(1):46–55
Patil SS, Kumar MS, Ball AS (2010) Microbial community dynamics in anaerobic bioreactors and algal tanks treating piggery wastewater. Appl Microbiol Biotechnol 87(1):353–363
Pielou EC (1966) The measurement of diversity in different types of biological collections. J Thero Biol 13:131–144
Ramanan R, Kim B-H, Cho D-H, Oh H-M, Kim H-S (2016) Algae–bacteria interactions: evolution, ecology and emerging applications. Biotechnol Adv 34(1):14–29
Shangguan H, Liu J, Zhu Y, Tong Z, Wu Y (2015) Start-up of a spiral periphyton bioreactor (SPR) for removal of COD and the characteristics of the associated microbial community. Bioresour Technol 193:456–462
Shannon CE (1948) A mathematical theory of communication. Bell Syst Tech J 27(3):379–423
Sheehan J, Dunahay T, Benemann J, Roessler P (1998) A look back at the US Department of Energy’s Aquatic Species Program: biodiesel from algae aquatic species program. National Renewable Energy Laboratory
Su Y, Mennerich A, Urban B (2011) Municipal wastewater treatment and biomass accumulation with a wastewater-born and settleable algal-bacterial culture. Water Res 45(11):3351–3358
Su Y, Mennerich A, Urban B (2012) Synergistic cooperation between wastewater-born algae and activated sludge for wastewater treatment: Influence of algae and sludge inoculation ratios. Bioresour Technol 105:67–73
Team RC (2013) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria
Vannelli T, Hooper AB (1993) Reductive dehalogenation of the trichloromethyl group of nitrapyrin by the ammonia-oxidizing bacterium Nitrosomonas europaea. Appl Environ Microbiol 59(11):3597–3601
Wang H, Zhang W, Chen L, Wang J, Liu T (2013) The contamination and control of biological pollutants in mass cultivation of microalgae. Bioresour Technol 128:745–750
Wang J, Yan D, Dixon R, Wang Y-P (2016) Deciphering the principles of bacterial nitrogen dietary preferences: a strategy for nutrient containment. MBio 7(4):e00792–e00716
Wang Q, Prasad R, Higgins BT (2019) Aerobic bacterial pretreatment to overcome algal growth inhibition on high-strength anaerobic digestates. Water Res 162:420–426
Ward JH Jr (1963) Hierarchical grouping to optimize an objective function. J Am Stat Assoc 58(301):236–244
Xin C, Addy MM, Zhao J, Cheng Y, Cheng S, Mu D, Liu Y, Ding R, Chen P, Ruan R (2016) Comprehensive techno-economic analysis of wastewater-based algal biofuel production: A case study. Bioresour Technol 211:584–593
Ye J, Song Z, Wang L, Zhu J (2016) Metagenomic analysis of microbiota structure evolution in phytoremediation of a swine lagoon wastewater. Bioresour Technol 219:439–444
Yoo C, Jun S-Y, Lee J-Y, Ahn C-Y, Oh H-M (2010) Selection of microalgae for lipid production under high levels carbon dioxide. Bioresour Technol 101(1):S71–S74
Zhang R, El-Mashad HM, Hartman K, Wang F, Liu G, Choate C, Gamble P (2007) Characterization of food waste as feedstock for anaerobic digestion. Bioresour Technol 98(4):929–935
Acknowledgments
The authors would like to thank Dr. Tien-Chieh Hung, Dr. Annalise Franz, Dr. Ruihong Zhang, Dr. Brendan Higgins, Tyler Barzee, Cody Yothers, and Kayla Rude for their assistance with experiments.
Funding
This work was supported by California Energy Commission grant ARV-15-008 and National Science Foundation project #1438211.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Human and animal rights and informed consent
This article does not contain any studies with human participants performed by any of the authors.
Additional information
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
About this article
Cite this article
Paddock, M.B., Fernández-Bayo, J.D. & VanderGheynst, J.S. The effect of the microalgae-bacteria microbiome on wastewater treatment and biomass production. Appl Microbiol Biotechnol 104, 893–905 (2020). https://doi.org/10.1007/s00253-019-10246-x
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00253-019-10246-x