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Possible binding orientations ofβ-lactams withinStaphylococcus aureus POβ-lactamase suggest factors involved inβ-lactamase resistance

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Summary

The electrostatic forces within the active site of theβ-lactamaseStaphylococcus aureus PC1 have been used to predict structures for the precatalytic complex with ampicillin, methicillin, clavulanate and imipenem. There are significant differences in the orientation of theseβ-lactams within the binding site, which explains the differences in their resistance to the lactamase. The electrostatic forces were calculated using a distributed multipole analysis ofab initio wave functions for both the lactams and the binding site residues, to ensure a good representation of the orientation dependence of this dominant contribution. The predicted binding orientations are contrasted with those predicted by overlaying the electrostatic extrema around the ligands. The accuracy of the ligand-only-based predictions is limited in some cases because of the subtle steric requirements of the lactamase binding site.

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References

  1. Sykes RB, Richmond MH (1970) Nature (London) 226:952

    Article  CAS  Google Scholar 

  2. Pratt RF (1992)β-lactamase: inhibition. In: Page MI (ed) The chemistry ofβ-lactams, Ch. 7. Chapman & Hall, London, p 230 and references cited therein.

    Google Scholar 

  3. Bush K, Jacoby GA, Medeiros AA (1995) Antimicrob Agents Chemother 39: 1211.

    CAS  Google Scholar 

  4. Joris B, Ghuysen JM, Dive G, Renard A, Dideberg O, Charlier P, Frere JM, Kelly JA, Boyington JC, Moews PC, Knox JR (1988) Biochem J 250:313

    CAS  Google Scholar 

  5. Ambler RP, Coulson AFW, Frere JM, Ghuysen JM, Joris B, Forsman M, Levesque RC, Tiraby G, Waley SG (1991) Biochem J 276:169

    Google Scholar 

  6. Bush K (1989) Antimicrob Agents Chemother 33:264

    CAS  Google Scholar 

  7. Sutton BJ, Artymiuk PJ, Cordero-Borboa AE, Little C, Phillips DC, Waley SG (1987) Biochem J 248:181

    CAS  Google Scholar 

  8. Herzberg O, Moult J (1987) Science 236:694

    CAS  Google Scholar 

  9. Herzberg O (1991) J Mol Biol 217:701

    Article  CAS  Google Scholar 

  10. Moews PC, Knox JR, Dideberg O, Charlier P, Frere JM (1990) Proteins: Struct, Funct Genet 7:156

    CAS  Google Scholar 

  11. Dideberg O, Charlier P, Wery JP, Dehottay P, Dusart J, Erpicum T, Frere JM, Ghuysen JM (1987) Biochem J 245:911

    CAS  Google Scholar 

  12. Waley SG (1992). In: Page MI (ed) The chemistry ofβ-lactams. Chapman & Hall, London, p 198

    Google Scholar 

  13. Jelsch C, Lenfant F, Masson JM, Samama JP (1992) FEBS Lett 299:135

    Article  CAS  Google Scholar 

  14. Strynadka NCJ, Adachi H, Jensen SE, Johns K, Sielecki A, Betzel C, Sutoh K, James MNG (1992) Nature 359:700

    Article  CAS  Google Scholar 

  15. Jelseh C, Mourey L, Masson JM, Samama JP (1993) Proteins: Struct Funct Genet 16:364

    Google Scholar 

  16. Herzberg O, Kapadia G, Blanco B, Smith TS, Coulson A (1991) Biochemistry 30:9503

    Article  CAS  Google Scholar 

  17. Knox JR, Moews PC, Escobar WA, Fink AL (1993) Protein Eng 6:11

    CAS  Google Scholar 

  18. Stone AJ, Alderton M (1985) Mol Phys 56:1047

    CAS  Google Scholar 

  19. Price SL, J Chem Soc Faraday Trans (in press)

  20. Chen CCH, Herzberg O (1992) J Mol biol 224:1103

    Article  CAS  Google Scholar 

  21. Apaya RP, Lucchese B, Price SL, Vinter JG (1995) J Comp Aided-Mol Design 9:33

    CAS  Google Scholar 

  22. Van der Wenden EM, Price SL, Apaya RP, Uzerman AP, Soudijn W (1995) J Comp Aided-Mol Design 9:44

    Google Scholar 

  23. Frau J, Price SL (1996) J Comp Aided-Mol Design 10:107

    CAS  Google Scholar 

  24. Allen FH, Davies JE, Galley JJ, Johnson O, Kennard O, Macrae CF, Mitchell EM, Mitchell GF, Smith JM, Watson DG (1991) J Chem Inf Comput Sci 31:187

    Article  CAS  Google Scholar 

  25. Bernstein FC, Koetzle TF, Williams GJB, Meyer EF Jr, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M (1977) J Mol Biol 112:535

    CAS  Google Scholar 

  26. Binkley JS, Pople JA, Hehre WJ (1980) J Am Chem Soc 102:939

    Article  CAS  Google Scholar 

  27. CADPAC5: The Cambridge Analytical Derivatives Package, Issue 5.0, 1992 A suite of quantum chemistry programs developed by Amos RD with contributions from Alberts IL, Andrews JS, Colwell SM, Handy NC, Jayatilaka D, Knowles PJ, Kobayashi R, Koga N, Laidig KE, Malsen PE, Murray CW, Rice JE, Sanz J, Simandiras D, Stone AJ, Su MD

  28. Price SL, Stone AJ (1987) J Chem Phys 86: 2859; Stone AJ, ORIENT version 2: A program for calculating the electrostatic interactions between molecules, University of Cambridge (1990)

    Article  CAS  Google Scholar 

  29. Vijayakumar S, Ravishanker G, Pratt RF, Beveridge DL (1995) J Am Chem Soc 117:1722

    Article  CAS  Google Scholar 

  30. Juteau JM, Billings E, Knox JR, Levesque RC (1992) Protein Engineering 5:693

    CAS  Google Scholar 

  31. Matagne A, Lamotte-Brasseur J, Frere JM (1993) Eur J Biochem 217:61

    Article  CAS  Google Scholar 

  32. Matagne A, Misselyn-Bauduin AM, Joris B, Erpicum T, Granier B, Frere JM (1990) Biochem J 265:131

    CAS  Google Scholar 

  33. Gibson RM, Christensen H, Waley SG (1990) Biochem J 272:613

    CAS  Google Scholar 

  34. Lamotte-Brasseur J, Dive G, Dideberg O, Charlier P, Frere JM, Ghuysen JM (1991) Biochem J 279:213

    CAS  Google Scholar 

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Frau, J., Price, S.L. Possible binding orientations ofβ-lactams withinStaphylococcus aureus POβ-lactamase suggest factors involved inβ-lactamase resistance. Theoret. Chim. Acta 95, 151–163 (1996). https://doi.org/10.1007/BF02335462

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