Skip to main content
Log in

Pea chloroplast topoisomerase I: purification, characterization, and role in replication

  • Published:
Plant Molecular Biology Aims and scope Submit manuscript

Abstract

A DNA-relaxing enzyme was purified 5 000-fold to homogeneity from isolated chloroplasts of Pisum sativum. The enzyme consists of a single polypeptide of 112 kDa. The enzyme was able to relax negatively supercoiled DNA in the absence of ATP. It is resistant to nalidixic acid and novobiocin, and causes a unit change in the linkage number of supercoiled DNA. The enzyme shows optimum activity at 37°C with 50 mM KCl and 10 mM MgCl2. From these properties, the enzyme can be classified as a prokaryotic type I topoisomerase.

Using a partiall purified pea chloroplast DNA polymerase fraction devoid of topoisomerase I activity for in vitro replication on clones containing the pea chloroplast DNA origins of replication, a 2–6-fold stimulation of replication activity was obtained when the purified topoisomerase I was added to the reaction at 70–100 mM KCl. However, when the same reaction was carried out at 125 mM KCl, which does not affect DNA polymerase activity on calf thymus DNA but is completely inhibitory for topoisomerase I activity, a 4-fold drop in activity resulted. Novobiocin, an inhibitor of topoisomerase II, was not found to inhibit the in vitro replication of chloroplast DNA.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Brill SJ, DiNardo S, Voelkel-Meiman K, Sternglanz R: Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA. Nature 326: 414–416 (1987).

    Google Scholar 

  2. Chu NM, Oishi KK, Tewari KK: Physical mapping of the pea chloroplast DNA and localization of the ribosomal RNA genes. Plasmid 6: 279–292 (1981).

    Google Scholar 

  3. Chu NM, Shapiro DR, Oishi KK, Tewari KK: Distribution of transfer RNA genes in the Pisum sativum chloroplast DNA. Plant Mol Biol 4: 65–79 (1985).

    Google Scholar 

  4. Crouse EJ, Schmitt JM, Bohnert H-J: Chloroplast and cyanobacterial genomes, genes and RNAs: a complilation. Plant Mol Biol Reporter 3: 43–89 (1985).

    Google Scholar 

  5. Dynan WS, Jendrisak JJ, Hager DA, Burgess RR: Purification and characterization of wheat germ DNA topoisomerase I (nicking-closing enzyme). J Biol Chem 256: 5860–5865 (1981).

    Google Scholar 

  6. Echeverria M, Martin MT, Richard B, Litvak S: A DNA topoisomerase type I from wheat embryo mitochondria. Plant Mol Biol 6: 417–427 (1986).

    Google Scholar 

  7. Gellert M:DNA topoisomerase. Ann Rev Biochem 50: 879–910 (1981).

    Google Scholar 

  8. Gold B, Carrillo N, Tewari KK, Bogorad L: Nucleotide sequence of a preferred maize chloroplast genome template for in vitro DNA synthesis. Proc Natl Acad Sci USA 84: 194–198 (1987).

    Google Scholar 

  9. Kaguni JM, Kornberg A: Replication initiated at the origin (ori C) of the E. coli chromosome reconstituted with purified enzymes: Cell 38: 183–190 (1984).

    Google Scholar 

  10. Kolodner RD, Tewari KK: Denaturation mapping studies on the circular chloroplast deoxyribonucleic acids from pea leaves. J Biol Chem 250: 4888–4895 (1975).

    Google Scholar 

  11. Kolodner RD, Tewari KK: The molecular size and conformation of the chloroplast DNA from higher plants. Biochim Biophys Acta 402: 372–390 (1975).

    Google Scholar 

  12. Laemmli UK: Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680–685 (1975).

    Google Scholar 

  13. Lam E, Chua NH: Chloroplast DNA gyrase and in vitro regulation of transcription by template topology and novobiocin. Plant Mol Biol 8: 415–424 (1987).

    Google Scholar 

  14. Maniatis T, Fritsch EF, Sambrook J: In: Molecular Cloning: a Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1982).

    Google Scholar 

  15. Marians KJ: Enzymology of DNA in replication in prokaryotes Crit Rev Biochem 17: 153–215 (1984).

    Google Scholar 

  16. McKown RL, Tewari KK: Purification and properties of a pea chloroplast DNA polymerase. Proc Natl Acad Sci USA 81: 2354–2358 (1984).

    Google Scholar 

  17. Meeker R, Nielsen B, Tewar KK: Localization of replication origins in pea chloroplast DNA. Mol Cell Biol 8: 1216–1223 (1988).

    Google Scholar 

  18. Oishi KK, Shapiro DR, Tewari KK: Sequence organization of a pea chloroplast DNA gene coding for 34,500 dalton protein. Mol Cell Biol 4: 2556–2563 (1984).

    Google Scholar 

  19. Record MT, Lohman TM, deHaseth P: Ion effects on ligandnucleic acid interactions. J Mol Biol 107: 145–158 (1976).

    Google Scholar 

  20. Seidlecki J, Zimmermann W, Weissbach A: Characterization of a prokaryotic topoisomerase I activity in chloroplast extracts from spinach. Nucl Acids Res 11: 1523–1536 (1983).

    Google Scholar 

  21. Shapiro DR, Tewari KK: Nucleotide sequences of transfer RNA genes in the Pisum sativum chloroplast DNA. Plant Mol Biol 6: 1–12 (1986).

    Google Scholar 

  22. Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Ohokata J, Yamaguchi-Shinozaki K, Ohto C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M: The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J 5: 2043–2049 (1986).

    Google Scholar 

  23. Sun E, Shapiro DR, Wu BW, Tewari KK: Specific in vitro transcription of 16S rRNA gene by pea chloroplast RNA polymerase. Plant Mol Biol 6: 429–439 (1986).

    Google Scholar 

  24. Tewari KK, Kolodner RD, Dobkin W: Replication of circular chloroplast DNA. In: Bucher T (ed) Genetics and Biogenesis of Chloroplasts and Mitochondria. Elsevier/North-Holland Biomedical Press, Amsterdam, 1976, pp. 379–386.

    Google Scholar 

  25. Thomas RJ, Mosig G: An ATP-dependent supercoiling topoisomerase of Chlamydomonas reinhardtii affects acumulation of specific chloroplast transcripts. Nucl Acids Res 13: 873–891 (1985).

    Google Scholar 

  26. Waddell J, Wang XM, Wu M: Electron microscopic localization of the chloroplast DNA replication origins in Chlamydomonas reinhardii. Nucl Acids Res 12: 3843–3856 (1984).

    Google Scholar 

  27. Wang JC: DNA topoisomerase. Ann Rev Biochem 54: 665–697 (1985).

    Google Scholar 

  28. Wang XM, Chang CH, Waddell J, Wu M: Cloning and delimiting one chloroplast DNA replication origin of Chlamydomonas. Nucl Acids Res 12: 3857–3872 (1984).

    Google Scholar 

  29. Wobbe CR, Weissbach L, Borowiec JA, Dean FB, Murakami Y, Bullock P, Hurwitz J. Replication of simian virus 40 origin-containing DNA in vitro with purified proteins. Proc Natl Acad Sci USA 84: 1834–1838 (1987).

    Google Scholar 

  30. Wu M, Lou JK, Chang DY, Chang CH, Nie ZQ: Structure and function of a chloroplasts DNA replication origin of Chlamydomonas reinhardii. Proc Natl Acad Sci USA 83: 6761–6765 (1986).

    Google Scholar 

  31. Zimmermann W, Weissbach A: Deoxyribonucleic acid synthesis in isolated chloroplasts and chloroplast extracts of maize. Biochemistry 21: 3334–3343 (1982).

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Nielsen, B.L., Tewari, K.K. Pea chloroplast topoisomerase I: purification, characterization, and role in replication. Plant Mol Biol 11, 3–14 (1988). https://doi.org/10.1007/BF00016009

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00016009

Keywords

Navigation