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MSP-PCR and RAPD molecular biomarkers to characterizeAmanita ponderosa mushrooms

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Abstract

Amanita ponderosa is a specie of wild edible mushrooms growing spontaneously in some Mediterranean microclimates, namely in Alentejo and Andaluzia, in the Iberian Peninsula. The nutritional values of these fungi make them highly exportable. Due to the wide diversity of mushrooms in nature, it is essential to differentiate and to identify the various edible species. RAPD markers have been used as a valuable tool to distinguish the different genotypes, although this method has not yet been used toAmanita ponderosa. Two methods were used to establish different genetic fingerprinting patterns of edible mushrooms. Samples ofAmanita ponderosa were collected in six different regions of the southwest of the Iberian Peninsula and compared by RAPD-PCR and MSP-PCR. Additionally, to compare molecular profiles with others genera of edible mushrooms, three species of Basidiomycetes (Pleurotus ostreatus, Lactarius deliciosus andCoriolus versicolor) and an Ascomycete were used. Results showed that some molecular markers discriminate among an Ascomycete from Basidiomycetes (Amanita ponderosa, Pleurotus ostreatus, Lactarius deliciosus andCoriolus versicolor) and discriminate among the different genera within basidiomycetes, as it is expected. Moreover, OPF-6, OPG-2, OPG3 and M13 primes allowed to unravel a level of genetic polymorphism withinAmanita ponderosa mushrooms collected from different geographic origin.

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References

  • Alves A., Phillips A., Henriques I., Correia A. (2007). Rapid differentiation of species of Botryosphaeriaceae by PCR fingerprinting. Res. Microbiol., 158: 112–121.

    Article  CAS  PubMed  Google Scholar 

  • Firenzuoli F., Gori L., Lombardo G. (2007). The medicinal mushroomAgaricus blazei Murrill: review of literature and pharmaco-toxicological problems. Advance Access Publication, 5 (1): 3–15.

    Google Scholar 

  • Godoy J., Negro J., Hiraldo F., Donázar J. (2004). Phylogeography, genetic structure and diversity in the endangered bearded vulture (Gypaetus barbatus, L.) as revealed by mitochondrial DNA. Mol. Ecol., 13: 371–390.

    Article  CAS  PubMed  Google Scholar 

  • Hseu R., Wang H., Wang H., Moncalvo J. (1996). Differentiation and grouping of isolates of theGanoderma lucidum complex by random amplified polymorphic DNA-PCR compared with grouping on the basis of internal transcribed spacer sequences. Appl. Environ. Microbiol., 62: 1354.

    CAS  PubMed  Google Scholar 

  • Khush R., Becker E., Wach M. (1992). DNA amplification polymorphisms of the cultivated mushroomAgaricus bisporus. Appl. Environ. Microbiol., 58: 2971.

    CAS  PubMed  Google Scholar 

  • Lee Y., Chang H., Kim J., Kim J., Lee, K. (2000). Lignocellulolytic mutants ofPleurotus ostreatus induced by gamma-ray radiation and their genetic similarities. Radiat. Phys. Chem., 57: 145–150.

    Article  CAS  Google Scholar 

  • Lopes M., Silva D., Freitas G., Tenreiro R. (2007). Simultaneous identification and typing ofCandida species by MSP-PCR and AFLP: Study of clinical isolates from a Portuguese pediatric hospital. J. Mycol. Médicale, 17: 157–67.

    Article  Google Scholar 

  • Martin F., Costa G., Delaruelle C., Diez J. (1998). Genomic fingerprinting of ectomycorrhizal fungi by microsatellite-primed PCR. In: Varma A., Ed., Mycorrhiza Manual. Springer-Verlag, Berlin, Heidelberg, New York, pp. 463–474.

    Google Scholar 

  • Martins M. (2004). Degradação biológica de fungicidas em amostras de solo, Tese de Doutoramento, Departamento de Química, Universidade de Évora, Évora, pp. 140-142.

  • Moncalvo J., Drehmel D., Vilgalys R. (2000). Variation in modes and rates of evolution in nuclear and mitochondrial ribosomal DNA in the mushroom genusAmanita (Agaricales, Basidiomycota): phylogenetic implications. Mol. Phylogenet. Evol., 16: 8–63.

    Article  Google Scholar 

  • Moreno G., Platas G., Peláez F., Bernedo M., Vargas A., Daza A., Santamaría C., Camacho M., de la Osa L., Manjón J. (2008). Molecular phylogenetic analysis shows thatAmanita ponderosa andA. Curtipes are distinct species. Mycol. Progr., 7: 41–47.

    Article  Google Scholar 

  • Moreno-Rojas R., Díaz-Valverde A., Moreno-Arroyo B., González T., Capote C. (2004). Mineral content of gurumelo (Amanita ponderosa). Food Chem., 85: 325–330.

    Article  CAS  Google Scholar 

  • Pacioni G., Leonardi M., Aimola P., Ragnelli A., Rubini A., Paolocci F. (2007). Isolation and characterization of some mycelia inhabitingTuber ascomata. Mycol. Res., III: 1450–1460.

    Article  Google Scholar 

  • Ro H., Kim S., Ryu J., Jeon C., Leed T., Le H. (2007). Comparative studies on the diversity of the edible mushroomPleurotus eryngii: ITS sequence analysis, RAPD fingerprinting, and physiological characteristics. Mycol. Res. III, 710–715.

    Article  Google Scholar 

  • Sambrook J., Feitsch E., Maniatis T. (1989). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.

    Google Scholar 

  • Zhang Y., Molina F. (1995). Strain typing ofLentinula edodes by random amplified polymorphic DNA assay. FEMS Microbiol. Lett., 131: 17–20.

    Article  CAS  PubMed  Google Scholar 

Download references

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Correspondence to M. Rosário Martins.

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Caldeira, A.T., Salvador, C., Pinto, F. et al. MSP-PCR and RAPD molecular biomarkers to characterizeAmanita ponderosa mushrooms. Ann. Microbiol. 59, 629–634 (2009). https://doi.org/10.1007/BF03175156

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  • DOI: https://doi.org/10.1007/BF03175156

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