Abstract
In Saccharomyces cerevisiae, circular plasmids that include either a centromere (CEN-plasmids) or a telomere sequence (TEL-plasmids) segregate more efficiently than circular ARS-plasmids. In contrast, circular plasmids that include both telomere and centromere sequences were unstable, a property we term TEL+CEN antagonism. TEL+CEN antagonism required a telomere repeat tract longer than 49 bp although the distance and relative orientation of the centromere and telomere sequences was not critical. TEL+CEN antagonism was alteviated in strains carrying different rap1 alleles including rap1 ts, rap1 s, and rap1 t alleles. Mutations SIR2, SIR3, SIR4, NAT1 and ARD1, genes that influence transcriptional silencing at telomeres and at the silent mating type loci, abolished TEL+CEN antagonism. Mutation of SIR1 also partially alleviated TEL-CEN antagonism. In some sir mutant strains short yeast artificial chromosomes (YACs), which are normally unstable, became more stable, suggesting that the same mechanism that caused TEL+CEN antagonism on circular plasmids may contribute to the instability of short linear plasmids.
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References
Agard DA, Sedat JW (1983) Three dimensional architecture of a polytene nucleus. Nature 302:676–681
Aparicio OM, Billington BL, Gottschling DE (1991) Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae. Cell 66:1–20
Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (eds) (1989) Current protocols in molecular biology. John Wiley & Sons, New York
Barker RE, Masison DC (1990) Isolation of the gene encoding the Saccharomyces cerevisiae centromere-binding protein CP1. Mol Cell Biol 10:2458–2467
Berman J, Tachibana CY, Tye B-K (1986) Identification of a telomere-binding activity from yeast. Proc Natl Acad Sci USA 83:3713–3717
Blackburn EH (1991) Structure and function of telomeres. Nature 350:569–573
Boeke JD, Trueheart J, Natsoulis G, Fink GR (1987) 5-fluororotic acid as a selective agent in yeast molecular genetics. Methods Enzymol 154:164–175
Braunstein M, Rose AB, Holmes SG, Allis CD, Broach JR (1993) Transcriptional silencing in yeast is associated with reduced nucleosome acetylation. Genes Dev 7:592–604
Buchman AR, Kimmerly WJ, Rine J, Kornberg RD (1989a) Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae. Mol Cell Biol 8:5086–5099
Buchman AR, Lue NF, Kornberg RD (1988b) Connections between transcriptional activators, silencers, and telomeres as revealed by functional analysis of a yeast DNA-binding protein. Mol Cell Biol 8:5086–5099
Button LL, Astell CR (1986) The Saccharomyces cerevisiae chromosome III left telomere has a type X, but not a type Y, ARS region. Mol Cell Biol 6:1352–1356
Cai M, Davis RW (1990) Yeast centromere binding protein CBF1, of the helix-loop-helix protein family, is required for chromosome stability and methionine prototrophy. Cell 61:437–489
Carbon J, Clarke L (1990) Centromere structure and function. New Biologist 2:10–19
Chien C-T, Buck S, Sternglanz R, Shore D (1993) Targeting of SIR1 protein establishes transcriptional silencing at HM loci and telomeres in yeast. Cell 75:531–555
Conrad MN, Wright JH, Wolf AJ, Zakian VA (1990) RAP1 protein interacts with yeast telomeres in vivo: overproduction alters telomere structure and decreases chromosome stability. Cell 63:739–750
Cumberledge S, Carbon J (1987) Mutational analysis of meiotic and mitotic centromere function in Saccharomyces cerevisiae. Genetics 117:203–212
Dani GM, Zakian VA (1983) Mitotic and meiotic stability of linear plasmids in yeast. Proc Natl Acad Sci USA 80:3406–3410
Diffley JFX, Stillman B (1989) Transcriptional silencing and lamins. Nature 342:24
Doheny KF, Sorger PK, Hyman AA, Tugendreich S, Spencer F, Hieter P (1993) Identification of essential components of the Saccharomyces cerevisiae kinetochore. Cell 73:761–774
Eissenberg JC (1989) Position effect variegation in Drosophila: towards a genetics of chromatin assembly. BioEssays 11:14–17
Elbe R (1992) A simple and efficient procedure for transformation of yeasts. Biotechniques 13:18–20
Enomoto S, Longtine MS, Berman J (1994) The enhancement of telomere plasmid segregation by the X-Telomere Associated Sequence in Saccharomyces cerevisiae involves SIR2, SIR3, SIR4 and ABF1. Genetics 136:757–767
Ferguson BM, Fangman WL (1992) A position effect on the time of replication origin activation in yeast. Cell 68:333–339
Ferguson BM, Brewer BJ, Reynolds AE, Fangman WL (1991) A yeast origin of replication is activated late in S phase. Cell 65:507–515
Funabiki H, Hagan I, Uzawa S, Yanagida M (1993) Cell cycle-dependent specific positioning and clustering of centromeres and telomeres in fission yeast. J Cell Biol 121:961–976
Fussell CP (1987) The Rab1 orientation: a prelude to synapsis. In: Moens PB (eds) Meiosis. Academic Press, Orlando, pp 275–299
Gasser SM, Laemmli UK (1987) A glimpse at chromosomal order. Trends Genet 3:16–22
Gietz RD, Sugino A (1988) New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74:527–534
Gilson E, Laroche T, Gasser SM (1993) Telomeres and the functional architecture of the nucleus. Trends Cell Biol 3:128–134
Gottschling DE (1992) Telomere-proximal DNA in Saccharomyces cerevisiae is refractory to methyltransferase activity in vivo. Proc Natl Acad Sci USA 89:4062–4065
Gottschling DE, Aparicio OM, Billington BL, Zakian VA (1990) Position effect at S. cerevisiae telomeres: reversible repression of poIII transcription. Cell 63:751–762
Hegemann JH, Shero JH, Cottarel G, Philippsen P, Hieter P (1988) Mutational analysis of centromere DNA from chromosome VI of Saccharomyces cerevisiae. Mol Cell Biol 8:2523–2535
Henderson ER, Blackburn EH (1989) An overhanging 3′ terminus is a conserved feature of telomeres. Mol Cell Biol 9:345–348
Herskowitz I, Rine J, Strathern JN (1992) Mating-type determination and mating-type interconversion in Saccharomyces cerevisiae. In: Jones EW, Pringle JR, Broach JR (ed) The molecular and cellular biology of the yeast Saccharomyces. Cold Spring Harbor Laboratory Press, Plainview, pp 583–656
Hieter P, Mann C, Snyder M, Davis RW (1985) Mitotic stability of yeast chromosomes: a colony color assay that measures nondisjunction and chromosome loss. Cell 40:381–392
Ivy JM, Klar AJ, Hicks JB (1986) Cloning and characterization of four SIR genes of Saccharomyces cerevisiae. Mol Cell Biol 6:688–702
Kayne PS, Kim U-J, Han M, Mullen JR, YoshizakiF, Grunstein M (1988) Extremely conserved histone H4 N terminus is dispensable for growth but essential for repressing the silent mating loci in yeast. Cell 55:27–39
Kimmerly WJ, Rine J (1987) Replication and segregation of plasmids containing cis-acting regulatory sites of silent mating-type genes in Saccharomyces cerevisiae are controlled by the SIR genes. Mol Cell Biol 7:4225–4237
Kimmerly W, Buchman A, Kornberg R, Rine J (1988) Roles of two DNA-binding factors in replication, segregation and transcriptional repression mediated by a yeast silencer. EMBO J 7:2241–2253
Kingsbury J, Koshland D (1993) Centromere function on minichromosomes isolated from budding yeast. Mol Biol Cell 4:859–870
Kirschman NA, Cramer JH (1988) Two new tools: multipurpose cloning vectors that carry kanamycin, spectinomycin or streptomycin resistance markers. Gene 68:163–165
Klar AJS, Kakar SN, Ivy JM, Hicks JB, Livi GP, Miglio LM (1985) SUM1, an apparent positive regulator of the cryptic mating-type loci in Saccharomyces cerevisiae. Genetics 111:745–758
Klein F, Laroche T, Cardenas ME, Hofmann JF-X, Schweizer D, Gasser SM (1992) Localization of RAP1 and topoisomerase II in nuclei and meiotic chromosomes of yeast. J Cell Biol 117:935–948
Klobutcher AL, Swanson MT, Donini P, Prescott DM (1981) All gene sized DNA molecules in four species of hypotrichs have the same terminal sequence and an unusual 3′ terminus. Proc Natl Acad Sci USA 78:3015–3019
Koshland D, Kent JC, Harltwell LH (1985) Genetic analysis of the mitotic transmission of minichromosomes. Cell 40:393–403
Koshland D, Rutledge L, Fitzgerald-Hayes M, Hartwell LH (1987) A genetic analysis of dicentric minichromosomes in Saccharomyces cerevisiae. Cell 48:801–812
Kurtz S, Shore D (1991) RAP1 protein activates and silences transcription of mating-type genes in yeast. Genes Dev 5:616–628
Kyrion G, Boakye KA, Lustig AJ (1992) C-terminal truncation of RAP1 results in the deregulation of telomere size, stability and function in Saccharomyces cerevisiae. Mol Cell Biol 12:5159–5173
Kyrion G, Liu K, Liu C, Lustig AJ (1993) RAP1 and telomere structure regulate telomere position effects in Saccharomyces cerevisiae. Genes Dev 7:1146–1159
Laurenson P, Rine J (1991) SUM1-1: a suppressor of silencing defects in Saccharomyces cerevisiae. Genetics 129:685–696
Laurenson P, Rine J (1992) Silencers, silencing and heritable transcriptional states. Microbiol Rev 56:543–560
Locke J, Kotarski MA, Tartoff KD (1988) Dosage dependent modifiers of position effect variegation in Drosophila melanogaster and a mass action model that explanits their effect. Genetics 120:181–198
Longtine MS, Wilson NM, Petracek ME, Berman J (1989) A yeast telomere binding activity binds to two related telomere sequence motifs and is indistinguishable from RAP1. Curr Genet 16:225–239
Longtine MS, Enomoto S, Finstad S, Berman J (1992) Yeast telomere repeat sequence (TRS) improves circular plasmid segregation, and TRS plasmid segregation involves the RAP1 gene product. Mol Cell Biol 12:1997–2009
Longtine MS, Enomoto S, Finstad SL, Berman J (1993) Telomere-mediated plasmid segregation in Saccharomyces cerevisiae involves gene products required for transcriptional repression at silencers and at telomeres. Genetics 133:171–182
Lustig AJ, Kurtz S, Shore D (1990) Involvement of the silencer and UAS binding protein RAP1 in regulation of telomere length. Science 250:549–553
Ma H, Kunes S, Schatz PJ, Botstein D (1987) Plasmid construction by homologous recombination in yeast. Gene 58:201–216
Marshall M, Mahoney D, Rose A, Hicks JB, Broach JR (1987) Functional domains of SIR4, a gene required for position effect regulation in Saccharomyces cerevisiae. Mol Cell Biol 7:4441–4452
McCarroll RM, Fangman WL (1988) Time of replication of yeast centromeres and telomeres. Cell 54:505–513
McNally FJ, Rine J (1991) A synthetic silencer mediates SIR-dependent functions in Saccharomyces cerevisiae. Mol Cell Biol 11:5648–5659
Megee PC, Morgan BA, Mittman BA, Smith MM (1990) Genetic analysis of histone H4: essential role of lysines subject to reversible acetylation. Science 247:841–845
Mellor J, Jiang W, Funk M, Rathjen J, Barnes CA, Hinz T, Hegemann JH, Philippsen P (1990) CPF1, a yeast protein which functions in centromeres and promoters. EMBO J 9:4017–4026
Mullen JR, Kayne PS, Moerschell RP, Tsunasawa S, Gribskov M, Colavito-Shepanski M, Grunstein M, Sherman F, Sternglanz R (1989) Identification and characterization of genes and mutants for an N-terminal acetyltransferase from yeast. EMBO J 8:2067–2075
Murray AW, Szostak JW (1983a) Construction of artificial chromosomes in yeast. Nature 305:189–193
Murray AW, Szostak JW (1983b) Pedigree analysis of plasmid segregation in yeast. Cell 34:961–970
Murray AW, Szostak JW (1986) Construction and behavior of circularly permuted and telocentric chromosomes in Saccharomyces cerevisiae. Mol Cell Biol 6:3166–3172
Murray AW, Claus TE, Szostak JW (1988) Characterization of two telomeric DNA processing reactions in Saccharomyces cerevisiae. Mol Cell Biol 8:4642–4650
Murray AW, Schultes NP, Szostak JW (1986) Chromosome length controls mitotic chromosome segregation in yeast. Cell 45:529–536
Palladino F, Laroche T, Gilson E, Axelrol A, Pillus L, Gasser SM (1993) SIR3 and SIR4 proteins are required for the positioning and integrity of yeast telomeres. Cell 75:543–555
Park EC, Szostak JW (1990) Point mutations in the yeast histone H4 gene prevent silencing of the silent mating type locus HML. Mol Cell Biol 10:4932–4934
Park E-C, Szostak JW (1992) ARD1 and NAT1 proteins form a complex that has N-terminal acetyltransferase activity. EMBO J 11:2087–2093
Pillus L, Rine J (1989) Epigenetic inheritance of transcriptional states in S. cerevisiae. Cell 59:637–647
Renauld H, Aparicio OM, Zierath PD, Billington BL, Chhablani SK, Gottschling DE (1993) Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and SIR3 dosage. Genes Dev 7:1133–1145
Rine J, Herskowitz I (1987) Four genes responsible for a position effect on expression from HML and HMR in Saccharomyces cerevisiae. Genetics 116:9–22
Roman H (1956) Studies of gene mutation in Saccharomyces. Cold Spring Harbor Symp Quant Biol 21:175–185
Rose MD, Winston F, Hieter P (1990) Methods in yeast genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
Runge KW, Zakian VA (1989) Introduction of extra telomeric DNA sequences into Saccharomyces cerevisiae results in telomere elongation. Mol Cell Biol 9:1488–1497
Runge KW, Zakian VA (1993) Saccharomyces cerevisiae linear chromosome stability (lcs) mutants increase the loss rate of artificial and natural linear chromosomes. Chromosoma 102:207–217
Sandell LL, Zakian VA (1992) Telomeric position effect in yeast. Trends Cell Biol 2:10–14
Shore D, Nasmyth K (1987) Purification and cloning of a DNA binding protein from yeast that binds to both silencer and activator elements. Cell 51:721–732
Shore D, Stillman DJ, Brand AH, Nasmyth KA (1987) Identification of silencer binding proteins from yeast: possible roles in SIR control and DNA replication. EMBO J 6:401–407
Sikorski RS, Boeke JD (1991) In vitro mutagenesis and plasmid shuffling: from cloned gene to mutant yeast. Methods Enzymol 194:302–318
Sikorski RS, Hieter P (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19–27
Snedecor GW, Cochran WG (1980) Statistical methods, seventh edition. The Iowa State University Press, Ames
Spencer F, Gerring SL, Connelly C, Heiter P (1990) Mitotic chromosome transmission fidelity mutants in Saccharomyces cerevisiae. Genetics 124:237–249
Stone EM, Swanson MJ, Romeo AM, Hicks JB, Sternglanz R (1991) The SIR1 gene of Saccharomyces cerevisiae and its role as an extragenic suppressor of several mating-defective mutants. Mol Cell Biol 11:2253–2262
Stotz A, Linder P (1990) The ADE2 gene from Saccharomyces cerevisiae: sequence and new vectors. Gene 95:91–98
Surosky RT, Tye B-K (1985) Construction of telocentric chromosomes in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 82:2106–2110
Surosky RT, Newlon CS, Tye B-K (1986) The mitotic stability of deletion derivatives of chromosome III in yeast. Proc Natl Acad Sci USA 83:414–418
Sussel L, Shore D (1991) Separation of transcriptional activation and silencing functions of the RAP1-encoded repressor/activator protein 1: isolation of viable mutants affecting both silencing and telomere length. Proc Natl Acad Sci USA 88:7749–7753
Sussel L, Vannier D, Shore D (1993) Epigenetic switching of transcriptional states: cis-and trans-acting factors affecting establishment of silencing at the HMR locus in Saccharomyces cerevisiae. Mol Cell Biol 13:3919–3928
Wellinger RJ, Wolf AJ, Zakian VA (1993a) Origin activation and formation of single-strand TG1–3 tails occur sequentially in late S phase on a yeast linear plasmid. Mol Cell Biol 13:4057–4065
Wellinger RJ, Wolf AJ, Zakian VA (1993b) Saccharomyces telomeres acquire single-strand TG1–3 tails late in S phase. Cell 72:51–60
Whiteway M, Freedman R, VanArsdell S, Szostak JW, Thorner J (1987) The yeast ARD1 gene product is required for repression of cryptic mating-type information at the HML locus. Mol Cell Biol 7:3713–3722
Wright JH, Gottschling DE, Zakian VA (1992) Saccharomyces telomeres assume a non-nucleosomal chromatin structure. Genes Dev 6:197–210
Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103–119
Zakian VA (1989) Structure and function of telomeres. Annu Rev Genet 23:579–604
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Enomoto, S., Longtine, M.S. & Berman, J. TEL+CEN antagonism on plasmids involves telomere repeat sequences tracts and gene products that interact with chromosomal telomeres. Chromosoma 103, 237–250 (1994). https://doi.org/10.1007/BF00352248
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DOI: https://doi.org/10.1007/BF00352248