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DNA fingerprinting detects genetic variability in the pearl millet downy mildew pathogen (Sclerospora graminicola)

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Abstract

Genetic variability in six host genotype-specific pathotypes of pearl millet downy mildew pathogen S. graminicola was studied at the molecular level using mini- and micro-satellites. Our results indicated that microsatellites (GAA)6, (GACA)4, and especially (GATA)4 were quite informative and showed high levels of polymorphism among the pathotypes. The six pathotypes could be classified into five groups based on the cluster analysis of their genetic similarities, thereby confirming the existence of distinct host genotype-specific virulence in S. graminicola pathotypes. We demonstrate, for the first time, the use of DNA fingerprinting to detect genetic variation in downy mildew fungus of pearl millet.

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References

  • Anderson PA, Lawrence Pryor A (1992) Inheritance of restriction fragment length polymorphism in the flax rust Melamspora lini. Theor Appl Genet 84:845–850

    Google Scholar 

  • Ball SL, Pike DJ (1984) Intercontinental variation in Sclerospora graminicola. Ann Appl Biol 104:41–51

    Google Scholar 

  • Boeger JM, Chen RS, McDonald BA (1993) Gene flow between geographic populations of Mycosphaerella Graminicola (anamorph Septoria tritici) detected with restriction fragment length polymorphism markers. Phytopathology 83:1148–1154

    Google Scholar 

  • Braithwaite KS, Manners JM (1989) Human hypervariable minisatellite probes detect DNA polymorphisms in the fungus Colletotrichum gloeosporioides. Curr Genet 16:473–475

    Google Scholar 

  • Epplen JT (1988) On simple repeated GATA/GACA sequences in animal genomes: a critical reappraisal. J Hered 79:409–417

    Google Scholar 

  • FAO (1983) 1982 FAO Production Year Book 36. FAO, Rome, Italy

    Google Scholar 

  • Gupta VS, Ramakrishna W, Rawat SR, Ranjekar PK (1994) (CAC)5 detects DNA fingerprints and sequences homologous to gene transcripts in rice. Biochem Genet 32:1–8

    Google Scholar 

  • Hammer JE, Farrall L, Orbach MJ, Valent B, Chumley FG (1989) Host species-specific conservation of a family of repeated DNA sequences in the genome of fungal plant pathogen. Proc Natl Acad Sci USA 86:9981–9985

    CAS  PubMed  Google Scholar 

  • Jeffreys AJ, Wilson V, Thein SL (1985) Individual specific “finger prints” of human DNA. Nature 316:76–79

    CAS  PubMed  Google Scholar 

  • Kashi Y, Tickochinsky Y, Genislav E, Traqi F, Nave A, Beckmann JS, Gruenbaum Y, Soller M (1990) Large restriction fragments containing poly TG are highly polymorphic in a variety of vertebrates. Nucleic Acids Res 18:1129–1132

    Google Scholar 

  • Kohli Y, Morrall RA, Anderson JB, Kohn LM (1992) Local and trans-Canadian clonal distribution of Sclerotina sclerotiorum on canola. Phytopathology 82:875–880

    Google Scholar 

  • Levy M, Rommao J, Marchetti MA, Hammer JE (1991) DNA fingerprinting with a dispersed repeated sequence resolves pathotype diversity in rice blast fungus. Plant Cell 3:95–102

    Article  CAS  PubMed  Google Scholar 

  • Lieckfeldt E, Meyer W, Borner VT (1993) Rapid identification & differentiation of yeasts by DNA and PCR Fingerprinting. J Basic Microbiol 33:413–426

    Google Scholar 

  • Longmire JL, Kraemer PM, Brown NC, Harde Kopf LC, Deaven LL (1990) A new multilocus DNA fingerprinting probe pV47–2. Nucleic Acids Res 18:1658

    Google Scholar 

  • McDonald BA, Miles J, Nelson LR, Pettway RE (1994) Genetic variability in nuclear DNA in field populations of Stagonospora nodorum. Phytopathology 84:250–255

    Google Scholar 

  • Meyer W, Koch A, Niemann C, Beyermann B, Epplen JT, Boerner T (1991) Differentiation of species and strains among filamentous fungi by DNA fingerprinting. Curr Genet 19:239–242

    Google Scholar 

  • Meyer W, Mitchell TG, Freedman EZ, Vilgalys R (1993) Hybridization probes for conventional DNA Fingerprinting use as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans. J Clin Microbiol 31: 2274–2280

    Google Scholar 

  • Michelmore RN, Pawar MN, Williams RJ (1982) Heterothallism in Sclerospora graminicola. Phytopathology 72:1368–1372

    Google Scholar 

  • Milgroom MG, Lipari SE, Powell WA (1992) DNA fingerprinting and analysis of population structure in the chestnut blight fungus Cryphonectria parasitica. Genetics 131:297–306

    Google Scholar 

  • Rachie KO, Majumdar JV (1980) Pearl millet. Pennsylvania State University Press, Pa.

    Google Scholar 

  • Ramakrishna W, Lagu MD, Gupta VS, Ranjekar PK (1994) DNA Fingerprinting rice in using oligonucleotide probes specific for simple repetitive DNA sequences. Theor Appl Genet 88: 402–406

    Google Scholar 

  • Ramakrishna W, Chowdari KV, Lagu MD, Gupta VS, Ranjekar PK (1995) DNA fingerprinting to detect genetic variation in rice using hypervariable DNA sequences Theor Appl Genet 90:1000–1006

    Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Cloning: a laboratory manual 2nd edn. Cold Spring Harbor laboratory Press, Cold Spring Harbor, N. Y.

    Google Scholar 

  • Schafer R, Zischler H, Birsner U, Becker A, Epplen JT (1988) Optimized oligonucleotide probes for DNA Fingerprinting. Electrophoresis 9:369–374

    Google Scholar 

  • Singh SD, Singh G (1987) Resistance to downy mildew in pearl millet hybrid NHB 3. Indian Phytopathol 40:178–180

    Google Scholar 

  • Singh SD, King SB, Werder J (1993) Downy mildew disease of pearl millet. Information bulletin No. 37. International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru A. P., India

    Google Scholar 

  • Sivaramakrishnan S, Harikrishnan R, Thakur RP, Rao VP (1995) Use of RAPD markers for the detection of genetic variability in pearl millet downy mildew pathogen. In: Sharma RP, Chopra VL, Swaminathan MS (eds.). Proc 2nd Asia-Pacific Conference Agric Biotechno. Madras. Oxford & IBH Publishing Company, New Delhi (in press)

    CAS  PubMed  Google Scholar 

  • Tautz D, Renz M (1984) Simple sequence are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res 12: 4127–4138

    Google Scholar 

  • Thakur RP (1993) Cereals Program, Annual Report 1992. Cereals Program, International Crops Research Institute for the Semi-Arid Tropics, Patancheru, A. P., India

    Google Scholar 

  • Thakur RP, Shetty KG (1993) Variation in pathogenicity among single oospore isolates of S. graminicola, the causal organism of downy mildew in pearl millet. Plant Pathol 42:715–721

    Google Scholar 

  • Thakur RP, Shetty KG, King SB (1992) Selection for host-specific virulence in asexual population of Sclerospora graminicola. Plant Path 41:626–632

    Google Scholar 

  • Turner BC, Elder JF, Laughlin TF, Davis WP, Taylor DS (1992) Extreme clonal diversity & divergence in populations of a selfing hermaphroditic fish. Proc Natl Acad Sci USA 89: 10643–10647

    Google Scholar 

  • Vassart G, Georges M, Monsieur R, Brocas H, Lequarre AS, Christopher D (1987) A sequence in M13 phage detects hypervariable minisatellites in humans & animal DNA. Science 235: 683–684

    Google Scholar 

  • Vosman B, Avens P, Rus-Kortekaas W, Smulders MJM (1992) Identification of highly polymorphic DNA regions in tomato. Theor Appl Genet 85:239–244

    Google Scholar 

  • Weising K, Ramser J, Kaemmer D, Kahl G, Epplen JT (1991a) Oligonucleotide fingerprinting in plants & fungi. In: Burke T, Dolf G, Jeffreys AJ, Wolff R (eds) DNA fingerprinting: approaches & application. Birkhauser, Basel, pp 312–319

    Google Scholar 

  • Weising K, Kaemmer D, Epplen JT, Weigand F, Sexena M, Kahl G (1991b) DNA fingerprinting of Ascochyta rabiei with synthetic oligonucleotides. Curr Genet 19:483–489

    Google Scholar 

  • Wetton JH, Carter RE, Parkin DT, Walters D (1987) Demographic study of a wild house sparrow population by DNA fingerprinting. Nature 327:147–149

    Article  CAS  PubMed  Google Scholar 

  • Xia JQ, Correll JC, Lee FN, Marchetti MA, Rhoads DD (1993) DNA fingerprinting to examine the microgeographic variation in the Magnaporthe grisea (Pyricularia grisea) population in two rice fields in Arkansas. Phytopathology 83:1029–1035

    Google Scholar 

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Communicated by J. Mac Key

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Sastry, J.G., Ramakrishna, W., Sivaramakrishnan, S. et al. DNA fingerprinting detects genetic variability in the pearl millet downy mildew pathogen (Sclerospora graminicola). Theoret. Appl. Genetics 91, 856–861 (1995). https://doi.org/10.1007/BF00223892

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