Skip to main content
Log in

The photocycle and the structure of iron containing bacteriorhodopsin —a kinetic and Mössbauer spectroscopy investigation

  • Published:
European Biophysics Journal Aims and scope Submit manuscript

Abstract

Bacteriorhodopsin (bR), converted by deionization to the blue form was reconstituted to the active purple membrane by the addition of Fe2+ or Fe3+ ions. 57Fe Mossbauer spectra of these samples were measured at different pH values (pH 3.9, pH 5.0 and pH 7.0) and at temperatures ranging from 4 K to 300 K. The hyperfine parameters reveal two iron environments with oxygen atoms in the neighbourhood of iron. Iron type 1 is in the 3+ high spin state. It is bound to acid side chains of the protein and/or the phosphate groups of the lipids. Iron type 2 is in the 2+ high spin state and is linked to carboxy groups of the protein in a rather unspecific way. Dynamics as measured by Mossbauer spectroscopy show that the purple membrane becomes flexible only above 220 K. At the interface between membrane and bulk water the mobility is comparable to that of proteins with hydrophilic surfaces. The photocycle of Fe 3+-bR is slowed down compared to native bR. 3–5 Fe3+/bR are sufficient to inhibit the photocycle turnover by one order of magnitude. This specific effect is also found with Cr3+, though it is less pronounced. Mössbauer spectra of Fe3+-bR at 4 K reveal that iron nuclei are spin-coupled, indicating their close spatial proximity. It is proposed that iron trinuclear clusters interact with the proton uptake site of bR.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Ariki M, Lanyi JK (1986) Characterization of metal ion-binding sites in bacteriorhodopsin. J Biol Chem 261:8167–8174

    Google Scholar 

  • Ariki M, Madge D, Lanyi JK (1987) Metal ion binding sites of bacteriorhodopsin: Laser-induced lanthanide luminescence study. J Biol Chem 262:4947–4951

    Google Scholar 

  • Bjerrum J, Schwarzenbach G, Sillen LG (1958) Stability constants of metal-ion complexes, Part I and II. The Chemical Society, London

    Google Scholar 

  • Butt H-J, Fendler K, Bamberg E, Titter J, Oesterhelt D (1989) Aspartic acids 96 and 85 play a central role in the function of bacteriorhodopsin as a proton pump. EMBO J 8:1657–1663

    Google Scholar 

  • Chang CH, Chen JG, Govindjee R, Ebrey T (1985) Cation binding by bacteriorhodopsin. Proc Natl Acad Sci USA 82:396–400

    Google Scholar 

  • Chang CH, Jonas R, Melchiore S, Govindjee R, Ebrey TG (1986) Mechanism and role of divalent cation binding of bacteriorhodopsin. Biophys J 49:731–739

    Google Scholar 

  • Chronister EL, Corcoran TC, Song L, EL-Sayed MA (1986) On the molecular mechanisms of the Schiff base deprotonation during the bacteriorhodopsin photocycle. Proc Natl Acad Sci USA 83:8580–8584

    Google Scholar 

  • Corcoran TC, Ismail KZ, El-Sayed MA (1987) Evidence for the involvment of more than one metal cation in the Schiff base deprotonation process during the photocycle of bacteriorhodopsin. Proc Natl Acad Sci USA 84:4094–4098

    Google Scholar 

  • Dér A, Tóth-Boconádi R, Keszthelyi L (1989) Bacteriorhodopsin as a possible chloride pump. FEBS Lett 259:24–26

    Google Scholar 

  • Drachev AL, Kaulen AD, Skulachev VP (1978) Time resolution of the intermediate steps in the bacteriorhodopsin-linked electrogenesis. FEBS Lett 87:161–167

    Google Scholar 

  • Drachev AL, Drachev LA, Kaulen AD, Khitrina LV (1984) The action of lanthanum ions and formaldehyde on the proton-pumping function of bacteriorhodopsin. Eur J Biochem 138:349–356

    Google Scholar 

  • Duñach M, Seigneuret M, Rigaud J-L, Padros E (1987) Characterization of the cation binding sites of the purple membrane. Electron spin resonance and flash photolysis studies. Biochemistry 26:1179–1186

    Google Scholar 

  • Duñach M, Seigneuret M, Rigaud J-L, Padros E (1988) Influence of cations on the blue to purple transition of bacteriorhodopsin. J Biol Chem 263:17378–17384

    Google Scholar 

  • Duñach M, Padros E, Muga A, Arrondo JLR (1989) Fourier-transform infrared studies on cation binding to native and modified purple membranes. Biochemistry 28:8940–8945

    Google Scholar 

  • Edgerton ME, Moore TA, Greenwood C (1980) Investigation into the effect of acid on the spectral and kinetic properties of purple membrane from Halobacterium halobium. Biochem J 189:413–420

    Google Scholar 

  • Eisenstein L, Lin SL, Dollinger G, Odashima K, Ding WD, Nakanishi K (1987) FTIR-difference studies on apoproteins. Protonation states of aspartic and glutamic acid residues during the photocycle of bacteriorhodopsin. J Am Chem Soc 109:6860–6862

    Google Scholar 

  • Engelhard M, Gerwert K, Hess B, Kreutz W, Siebert F (1985) Light-driven protonation changes of internal aspartic acids of bacteriorhodopsin: An investigation by static and time-resolved infrared difference spectroscopy using [4-13C] aspartic acid labeled purple membrane. Biochemistry 24:400–407

    Google Scholar 

  • Engelhard M, Hess B, Chance M, Chance B (1987) X-ray absorption studies on bacteriorhodopsin. FEBS Lett 222:275–278

    Google Scholar 

  • Engelhard M, Hess B, Emeis D, Metz G, Kreutz W, Siebert F (1989a) Magic angle sample spinning 13C nuclear magnetic resonance of isotopically labeled bacteriorhodopsin. Biochemistry 28:3967–3975

    Google Scholar 

  • Engelhard M, Pevec B, Hess B (1989b) Modification of two peptides of bacteriorhodopsin with a pentaaminecobalt (III) complex. Biochemistry 28:5432–5438

    Google Scholar 

  • Figgis BN, Robertson GB (1965) Crystal-molecular structure and magnetic properties of Cr3(CH3COO)6OCl*5H2O. Nature 205:694–695

    Google Scholar 

  • Fischer U, Oesterhelt D (1979) Chromophore equilibria in bacteriorhodopsin. Biophys J 28:211–230

    Google Scholar 

  • Gerwert K, Hess B, Soppa J, Oesterhelt D (1989) Role of aspartate-96 in proton translocation by bacteriorhodopsin. Proc Natl Acad Sci USA 86:4943–4947

    Google Scholar 

  • Hauser H (1975) Lipids. In: Francks F (ed) Water. Plenum Press, New York, pp 209–303

    Google Scholar 

  • Huang KS, Bayley H, Khorana HG (1980) Delipidation of bacteriorhodopsin and reconstitution with exogenous lipids. Proc Natl Acad Sci USA 77:323–327

    Google Scholar 

  • Katre NV, Kimura Y, Stroud RM (1986) Cation binding sites on the projected structure of bacteriorhodopsin. Biophys J 50:277–284

    Google Scholar 

  • Kimura Y, Ikegami A, Stoeckenius W (1984) Salt and pH-dependent changes of the purple membrane absorption spectrum. Photochem Photobiol 40:641–646

    Google Scholar 

  • Kobayashi T, Othani H, Iwai J-I, Ikegami A, Uchiki H (1983) Effect of pH on the photoreaction cycles of bacteriorhodopsin. FEBS Lett 162:197–200

    Google Scholar 

  • Maurer R, Vogel J, Schneider S (1987) Analysis of flash photolysis data by a global fit with multi-exponentials. I. Determination of the minimal number of intermediates in the photocycle of bacteriorhodopsin by the ‘stability criterion’. Photochem Phobiol 46:247–253

    Google Scholar 

  • Mogi T, Stern LJ, Marti T, Chao BH, Khorana HG (1988) Aspartic acid substitutions affect proton translocation by bacteriorhodopsin. Proc Natl Acad Sci USA 85:4148–4152

    Google Scholar 

  • Mowery PC, Lozier RH, Chae Q, Tseng YW, Tayler M, Stoeckenius W (1979) Effect of acid pH on the absorption spectra and photoreactions of bacteriorhodopsin. Biochemistry 18:4100–4107

    Google Scholar 

  • Nagle JF, Parodi LA, Lozier RH (1982) Procedere for testing kinetic models of the photocycle of bacteriorhodopsin. Biophys J 38:161–174

    Google Scholar 

  • Nienhaus GU, Heinzl J, Huenges E, Parak F (1989) Protein crystal dynamics studied by time-resolved analysis of X-ray diffuse scaterring. Nature 338:665–666

    Google Scholar 

  • Nozik AJ, Kaplan M (1967) Mössbauer resonance studies of ferrous ions in ice. J Chem Phys 47:2960–2977

    Google Scholar 

  • Nozik AJ, Kaplan M (1968) Paramagnetic and electric quadrupole hyperfine interactions of ferric ions in ice and FeCl36H2O. J Chem Phys 49:4141–4149

    Google Scholar 

  • Oesterhelt D, Stoeckenius W (1971) Rhodopsin-like protein from the purple membrane of Halobacterium halobium. Nature 233:149–152

    Google Scholar 

  • Oesterhelt D, Stoeckenius W (1974) Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane. Methods Enzymol 31A:667–678

    Google Scholar 

  • Oesterhelt D, Tittor J (1989) Two pumps, one principle: light driven ion transport in halobacteria. Trends Biochem Sci 14:57–61

    Google Scholar 

  • Ohtani H, Kobayashi T, Iwai J-I, Ikegami A (1986) Picosecond and nanosecond spectroscopies of the photochemical cycles of acidified bacteriorhodopsin. Biochemistry 25:3356–3363

    Google Scholar 

  • Ovchinnikov YA, Abdualev NG, Modyanov NN (1982) Structural basis of proton-translocating protein function. Ann Rev Biophys Bioeng 11:445–463

    Google Scholar 

  • Parak F, Reinisch L (1986) Mössbauer effect in the study of structure dynamics. Methods Enzymol 131:568–607

    Google Scholar 

  • Parak F, Finck P, Kucheida D, Mössbauer RL (1981) Fluctuations between conformational substates in deoxygenated myoglobin. Hyperfine Interact 10:1075–1078

    Google Scholar 

  • Parak F, Knapp EW, Kucheida D (1982) Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals. J Mol Biol 161:177–194

    Google Scholar 

  • Parak F, Hartmann H, Aumann KD, Reuscher H, Rennekamp G, Bartunik H, Steigemann W (1987) Low temperature X-ray investigation of structural distribution in myoglobin. Eur Biophys J 15:237–249

    Google Scholar 

  • Singh GP, Parak F, Hunklinger S, Dransfeld K (1981) Role of adsorbed water in the dynamics of metmyoglobin. Phys Rev Lett 47:685–688

    Google Scholar 

  • Stern LJ, Ahl PL, Marti T, Mogi T, Duñach M, Berkowitz S, Rothschild KJ, Khorana HG (1989) Substitution of membrane-embedded aspartic acids in bacteriorhodopsin causes changes in different steps of the photochemical cycle. Biochemistry 28:10035–10042

    Google Scholar 

  • Sternheimer RM (1963) Quadrupole antishielding factors of iron. Phys Rev 130:1423–1425

    Google Scholar 

  • Stoeckenius W, Bogomolni RA (1982) Bacteriorhodospin and related pigments of halobacteria. Ann Rev Biochem 52:567–615

    Google Scholar 

  • Szundi I, Stoeckenius W (1987) Effect of lipid surface charges on the purple-to-blue transition of bacteriorhodopsin. Proc Natl Acad Sci USA 84:3681–3684

    Google Scholar 

  • Szundi I, Stoeckenius W (1989) Surface pH controls purple-to-blue transition of bacteriorhodopsin. A theoretical model of purple membrane surface. Biophys J 56:369–383

    Google Scholar 

  • Tittor J, Soell C, Oesterhelt D, Butt H-J, Bamberg E (1989) A defective proton pump, point-mutated bacteriorhodopsin Asp96→Asn is fully reactivated by azide. EMBO J 8:3477–3482

    Google Scholar 

  • Váró G, Lanyi JK (1989) Photoreactions of bacteriorhodopsin at acid pH. Biophys J 56:1143–1151

    Google Scholar 

  • Zubov B, Tsuji K, Hess B (1986) Transition kinetics of the conversion of blue to purple bacteriorhodopsin upon magnesium binding. FEBS Lett 200:226–230

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Offprint requests to: M. Engelhard

Rights and permissions

Reprints and permissions

About this article

Cite this article

Engelhard, M., Kohl, K.D., Müller, K.H. et al. The photocycle and the structure of iron containing bacteriorhodopsin —a kinetic and Mössbauer spectroscopy investigation. Eur Biophys J 19, 11–18 (1990). https://doi.org/10.1007/BF00223568

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00223568

Key words

Navigation