Abstract
Determination of the nucleotide sequence downstream from the Lysobacter lactamgenus pcbC gene encoding isopenicillin N synthase revealed that five open-reading frames (ORF) including the pcbC gene were tightly linked in the same orientation. Each ORF has the remarkable feature of the protein-coding frame in the DNA sequence with a high G + C content. Expression in Escherichia coli and a comparison of the deduced amino acid sequences with published sequences showed that the gene cluster contained a deacetoxycephalosporin C synthetase (DAOCS) gene (cefE), an ORF having homology with the Cephalosporium acremonium DAOCS/deacetylcephalosporin C synthetase gene (cefEF), an isopenicillin N epimerase gene(cefD), and a β-lactamase gene. The gene order was pcbC-cefE-ORF3-cefD-β-lactamase.
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References
Amann E, Brosius J (1985) ATG vectors for regulated high-level expression of cloned genes in Escherichia coli. Gene 40: 183–190
Bibb MJ, Findlay PR, Johnson MW (1984) The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences. Gene 30: 157–166
Chen CW, Lin H-F, Kuo CL, Tsai HL, Tsai J-FY (1988) Cloning and expression of a DNA sequence conferring cephamycin C production. Biotechnology 6: 1222–1224
Coque JJR, Martin JF, Liras P (1993) Characterization and expression in Streptomyces lividans of cefD and cefE genes from Nocardia lactamdurans: the organization of the cephamycin gene cluster differs from that in Streptomyces clavuligerus. Mol Gen Ganet 236:453–458
Demain AL (1983) Biosynthesis of β-lactam antibiotics, In: Demain AL, Solomon NA (eds) Antibiotics containing the beta-lactam structure, vol 1. Springer, New York Berlin Haidelberg, pp 189–228
Fujisawa Y, Shirafuji H, Kida M, Nara K, Yoneda Y, Kanzaki T (1975) Accumulation of deacetylcephalosporin C by cephalosporin C negative mutants of Cephalosporium acremonium. Agric Biol Chem 39:1295–1301
Jaurin B, Grundstrom T (1981) ampC cephalosporinase of Escherichia coli K-12 has a different evolutionary origin from that of β-lactamase of the penicillinase type. Proc Natl Acad Sci USA 78:4897–4901
Jensen SE, Westlake DWS, Bowers RJ, Wolfe S (1982) Cephalosporin formation by cell-free extracts from Streptomyces clavuligerus. J Antibiot (Tokyo) 35:1351–1360
Jensen SE, Westlake DWS, Wolfe S (1983) Partial purification and characterization of isopenicillin N epimerase activity from Streptomyces clavuligerus. Can J Microbiol 29:1526–1531
Jensen SE, Westlake S (1985) Deacetoxycephalosporin C synthetase and deacetylcephalosporin C hydroxylase are two separate enzymes in Streptomyces clavuligerus. J Antibot (Tokyo). 38:263–265
Kimura H, Suzuki M, Sumino Y (1995) Cloning and expression of isopenicillin N synthase gene from Lysobacter lactamgenus YK90. J Ferment Bioeng 80:118–123
Kovacevic S, Miller JR (1991) Cloning and sequencing of β-lactam hydroxylase gene (cefF) from Streptomyces clavuligerus: gene duplication may have led to separate hydroxylase and expandase activities in the Actinomycetes. J Bacteriol 173:398–400
Kovacevic S, Weigel BJ, Tobin MB, Ingolia TD, Miller JR (1989) Cloning, characterization, and expression in Escherichia coli of the Streptomyces clavuligerus gene encoding deacetoxycephalosporin C synthetase. J Bacteriol 171:754–760
Kovacevic S, Tobin MB, Miller JR (1990) The β-lactam biosynthesis genes for isopenicillin N epimerase and deacetoxycephalosporin C synthetase are expressed from a single transcript in Streptomyces clavuligerus. J Bacteriol 172:3952–3958
MacCabe AP, Riach MBR, Unkles SE, Kinghorn JR (1990) The Aspergillus nidulans npeA locus consists of three contiguous genes required for penicillin biosynthesis. EMBO J 9:279–287
Malpartida F, Hopwood DA (1984) Molecular cloning of the whole biosynthetic pathway of a Streptomyces antibiotic and its expression in a heterologous host. Nature 309:462–464
Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
Martin JF, Liras P (1989) Enzymes involved in penicillin, cephalosporin and cephamycin biosynthesis. In: Fiechter A (ed) Advances in biochemical engineering/biotechnology, vol 39. Springer, Berlin Heildlberg, pp 153–187, New York
Nozaki Y, Okonogi K, Katayama N, Ono H, Harada S, Kondo M, Okazaki H (1984) Cephabacins, new cephem antibiotics of bacterial origin. 4. Antibacterial activities, stability to β-lactamases and mode of action. J Antibiot (Tokyo) 37:1555–1565
Ono H, Nozaki Y, Katayama N, Okazaki H (1984) Cephabacins, new cephem antibiotics of bacterial origin. 1. Discovery and taxonomy of the producing organisms and fermentation. J Antibiot (Tokyo) 37:1528–1535
Samson SM, Dotzlaf JE, Slisz ML, Becker GW, Frank RMV, Veal LE, Yeh W, Miller JR, Queener SW, Ingolia TD (1987) Cloning and expression of the fungal expandase/hydroxylase gene involved in cephalosporin C biosynthesis. Biotechnology 5:1207–1214
Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467
Shine J, Dalgarno L (1974) The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosoma binding sites. Proc Natl Acad Sci USA 71:1342–1346
Singh PD, Ward PC, Wells JS, Ricca CM, Trejo WH, Principe PA, Sykes RB (1982) Bacterial production of deacetoxycephalosporin C. J Antibiot (Tokyo) 35:1397–1399
Skatrud PL, Queener SW (1989) An electrophoretic molecular karyotype for an industrial strain of Cephalosporium acremonium. Gene 78:331–338
Smith DJ, Burnham MKR, Edwards J, Earl AJ, Turner G (1990a) Cloning and heterologous expression of the penicillin biosynthetic gene cluster from Penicillium chrysogenum. Biotechnology 8:39–41
Smith DJ, Burnham MKR, Bull JH, Hodgson JE, Ward JM, Browne P, Brown B, Earl AJ, Turner G (1990b) β-Lactam antibiotic biosynthetic genes have been conserved in clusters in prokaryotes and eukaryotes. EMBO J 9:741–747
Tobin MB, Kovacevic S, Madduri K, Hoskins JA, Skatrud PL, Vining LC, Stuttard C, Miller JR (1991) Localization of the lysine ɛ-aminotransferase (lat) and ψ-(l-α-aminoadipyl)-l-cysteinyl-d-valine synthetase (pcbAB) genes from Streptomyces clavuligerus and production of lysine ɛ-aminotransferase activity in Escherichia coli. J Bacteriol 173:6223–6229
Tsubotani S, Hida T, Kasahara F, Wada Y, Harada S (1984) Cephabacins, new cephem antibiotics of bacterial origin. 3. Structural determination. J Antibiot (Tokyo) 37:1546–1554
Weigel BJ, Burgett SG, Chen VJ, Skatrud PL, Frolik CA, Queener SW, Ingolia TD (1988) Cloning and expression in Escherichia coli of isopenicillin N synthetase genes from Streptomyces lipmanii and Aspergillus nidulans. J Bacteriol 170:3817–3826
Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103–119
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Kimura, H., Izawa, M. & Sumino, Y. Molecular analysis of the gene cluster involved in cephalosporin biosynthesis from Lysobacter lactamgenus YK90. Appl Microbiol Biotechnol 44, 589–596 (1996). https://doi.org/10.1007/BF00172490
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DOI: https://doi.org/10.1007/BF00172490