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The isolation and characterisation of a cDNA clone encoding L-asparaginase from developing seeds of lupin (Lupinus arboreus)

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Abstract

An L-asparaginase cDNA clone, BR4, was isolated from a Lupinus arboreus Sims developing seed expression library by screening with polyclonal antibodies to the seed asparaginase. The cDNA hybridised with an oligonucleotide probe designed from amino acid sequence data and was found on sequencing to be 947 bp in length. Six polypeptide sequences obtained previously could be placed along the longest open reading frame. Computer-aided codon use analysis revealed that the cDNA sequence was consistent with other plant genes in terms of codon use. The cDNA insert was used to analyse asparaginase transcription in various tissues by northern blot analysis. A transcript size of approximately 1.2 kb was detected in L. arboreus seed total and poly(A)+ RNA. The level of this transcript declined from 30 days after anthesis to an undetectable level by day 55. Furthermore, under the high stringency conditions used, the seed asparaginase cDNA did not hybridise with total or poly(A)+ RNA isolated from root tips, suggesting that the asparaginase known to be present in this tissue may be the product of a different gene. Southern analysis suggested the seed asparaginase is a single-copy gene. The plant asparaginase amino acid sequence did not have any significant homology with microbial asparaginases but was 23% identical and 66% similar (allowing for conservative substitutions) to a human glycosylasparaginase.

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References

  1. Atkins CA, Pate JS, Peoples MB, Joy KW: Amino acid transport and metabolism in relation to the nitrogen economy of a legume leaf. Plant Physiol 71: 841–848 (1983).

    Google Scholar 

  2. Atkins CA, Pate JS, Sharkey PJ: Asparagine metabolism-Key to the nitrogen nutrition of developing legume seeds. Plant Physiol 56: 807–812 (1975).

    Google Scholar 

  3. Bankier AT, Weston KM, Barrell BG: Random cloning and sequencing by the M13/dideoxynucleotide chain termination method. Meth Enzymol 155: 51–93 (1987).

    PubMed  Google Scholar 

  4. Birnboim HC, Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA Nucl Acids Res 7: 1513–1523 (1979).

    PubMed  Google Scholar 

  5. Chang KS, Farnden KJF: Purification and properties of asparaginase from Lupinus arboreus and Lupinus angustifolius. Arch Biochem Biophys 208: 49–58 (1981).

    PubMed  Google Scholar 

  6. Dayhoff M, Schwartz RM, Orcutt BC: A model of evolutionary change in proteins. In Dayhoff M (ed), Atlas of Protein Sequence and Structure, vol. 5, Suppl. 3, pp. 345–352. National Biomedical Research Foundation Silver Spring, MD (1978).

    Google Scholar 

  7. Deininger PL: Random subcloning of sonicated DNA: Application to shotgun DNA sequence analysis. Anal Biochem 129: 216–223 (1983).

    PubMed  Google Scholar 

  8. Dickson JMJJ, Vincze E, Grant MR, Smith LA, Rodber KA, Farnden KJF, Reynolds PHS: Molecular cloning of the gene encoding developing seed L-asparaginase from Lupinus angustifolius. Plant Mol Biol, in press (1992).

  9. Evans IJ, James AM, Barnes SR: Organisation and evolution of repeated DNA sequences in closely related plant genomes. J Mol Biol 170: 803–826 (1983).

    PubMed  Google Scholar 

  10. Feinberg AP, Vogelstein B: A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132: 6–13 (1983).

    PubMed  Google Scholar 

  11. Fisher KJ, Tollersrud OK, Aronson NN: Cloning and sequence analysis of a cDNA for human glycosylasparaginase. FEBS Lett 269: 440–444 (1990).

    Article  PubMed  Google Scholar 

  12. Grant MR, Carne A, Hill DF, Farnden KJF: The isolation and characterisation of a cDNA clone encoding Lupinus angustifolius root nodule glutamine synthetase. Plant Mol Biol 13: 481–490 (1989).

    PubMed  Google Scholar 

  13. Grantham R, Gautier C, Gouy M, Mercier R, Pavé A: Codon catalog usage and the genome hypothesis. Nucl Acids Res 8: r49-r62 (1980).

    PubMed  Google Scholar 

  14. Gübler U, Hoffman BJ: A simple and very efficient method for generating cDNA libraries. Gene 25: 263–269 (1983).

    Article  PubMed  Google Scholar 

  15. Hostalácio S, Sodek L, Valio IFM: Atividade de alantoinase e asparaginase nas differentes partes da semente de feijão (Phaseolus vulgaris L.). Revta Brasil Bot 8: 81–85 (1985).

    Google Scholar 

  16. Huynh TV, Young RA, Davis RW: Constructing and screening cDNA libraries in γgt10 and γgt11. In: Glover DM (ed) DNA Cloning: A Practical Approach, Vol. 1, pp. 49–88. IRL Press, Oxford (1985).

    Google Scholar 

  17. Ireland RJ, Joy KW: Two routes of asparagine metabolism in Pisum sativum L. Planta 151: 289–292 (1981).

    Google Scholar 

  18. Lea PJ, Festenstein GN, Hughes JS, Miflin BJ: An immunological and enzymological survey of asparaginase in seeds of Lupinus. Phytochemistry 23: 511–514 (1984).

    Google Scholar 

  19. Lea PJ, Fowden L, Miflin BJ: The purification and properties of asparaginase from Lupinus species. Phytochemistry 17: 217–222 (1978).

    Google Scholar 

  20. Lea PJ, Miflin BJ: Transport and metabolism of asparagine and other nitrogen compounds within the plant. In: Miflin BJ (ed) The Biochemistry of Plants: A Comprehensive Treatise, vol. 5, Amino acids and derivatives, pp. 569–607. Academic Press, New York (1980).

    Google Scholar 

  21. Lough TJ, Chang KS, Carne A, Monk BC, Reynolds PHS, Farnden KJF: L-Asparaginase from developing seeds of Lupinus arboreus: developmental appearance, purification and partial protein sequence. Phytochemistry, in press (1992).

  22. Maniatis T, Fritsch EF, Sambrook J: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Press, New York (1982).

    Google Scholar 

  23. Messing J: New M13 vectors for cloning. Meth Enzymol 101: 20–78 (1983).

    PubMed  Google Scholar 

  24. Misra S, Oaks A: A spectrophotometric assay for asparaginase obtained from corn (Zea mays) endosperm tissue. Can J Bot 58: 2481–2483 (1980).

    Google Scholar 

  25. Murray DR, Kennedy IR: Changes in activities of enzymes of nitrogen metabolism in seedcoats and cotyledons during embryo development in pea seeds. Plant Physiol 66: 782–786 (1980).

    Google Scholar 

  26. Murray EE, Lotzer J, Eberle M: Codon in plant genes. Nucl Acids Res 17: 477–498 (1989).

    PubMed  Google Scholar 

  27. Pate JS, Atkins CA, Herridge DF, Layzell DB: Synthesis, storage and utilization of amino compounds in white lupin (Lupinus albus L.). Plant Physiol 67: 37–42 (1981).

    Google Scholar 

  28. Pearson WR, Lipman DJ: Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85: 2444–2448 (1988).

    PubMed  Google Scholar 

  29. Reed KC, Mann DA: Rapid transfer of DNA from agarose gels to nylon membranes. Nucl Acids Res 13: 7207–7221 (1985).

    PubMed  Google Scholar 

  30. Rigby PWJ, Dieckmann M, Rhodes C, Berg P: Labelling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol 113: 237–251 (1977).

    PubMed  Google Scholar 

  31. Sanger F, Nicklen S, Coulson AR: DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74: 5463–5467 (1977).

    PubMed  Google Scholar 

  32. Scalenghe F, Turoc E, Edström JE, Pirrotta V, Melli M: Microdissection and cloning of DNA from a specific region of Drosophila melanogaster polytene chromosomes. Chromosoma 82: 205–216 (1981).

    PubMed  Google Scholar 

  33. Sieciechowicz KA, Ireland RJ, Joy KW: Diurnal changes in asparaginase activity in pea leaves. II. Regulation of activity. J Exp Bot 39: 707–721 (1988).

    Google Scholar 

  34. Sieciechowicz KA, Joy KW, Ireland RJ: The metabolism of asparagine in plants. Phytochemistry 27: 663–671 (1988).

    Google Scholar 

  35. Sodek L, Lea PJ, Miflin BJ: Distribution and properties of a potassium-dependent asparaginase isolated from developing seeds of Pisum sativum and other plants. Plant Physiol 65: 22–26 (1980).

    Google Scholar 

  36. Southern EM: Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98: 503–517 (1975).

    PubMed  Google Scholar 

  37. Staden R, McLachlan AD: Codon preference and its use in identifying protein coding regions in long DNA sequences. Nucl Acids Res 10: 141–156 (1982).

    PubMed  Google Scholar 

  38. Stockwell PA: DNA sequence analysis software. In: Bishop MJ, Rawlings CJ (eds) Nucleic Acid and Protein Sequence Analysis: A Practical Approach, pp. 19–45. IRL Press, Oxford (1987).

    Google Scholar 

  39. Stockwell PA: HOMED: a homologous sequence editor. Trends Biochem Sci 13: 322–324 (1988).

    PubMed  Google Scholar 

  40. Streeter JG: Asparaginase and asparagine transaminase in soybean leaves and root nodules. Plant Physiol 60: 235–239 (1977).

    Google Scholar 

  41. Tarentino AL, Maley F: The purification and properties of a β-aspartyl-N-acetylglucosylamine amidohydrolase from hen oviduct. Arch Biochem Biophys 130: 295–303 (1969).

    PubMed  Google Scholar 

  42. Urquhart AA, Joy KW: Transport, metabolism and redistribution of xylem-borne amino acids in developing pea shoots. Plant Physiol 6: 1226–1232 (1982).

    Google Scholar 

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Lough, T.J., Reddington, B.D., Grant, M.R. et al. The isolation and characterisation of a cDNA clone encoding L-asparaginase from developing seeds of lupin (Lupinus arboreus). Plant Mol Biol 19, 391–399 (1992). https://doi.org/10.1007/BF00023386

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  • DOI: https://doi.org/10.1007/BF00023386

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