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Oriented Morphometry of Folds on Surfaces

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Information Processing in Medical Imaging (IPMI 2009)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 5636))

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Abstract

The exterior surface of the brain is characterized by a juxtaposition of crests and troughs that together form a folding pattern. The majority of the deformations that occur in the normal course of adult human development result in folds changing their length or width. Current statistical shape analysis methods cannot easily discriminate between these two cases. Using discrete exterior calculus and Tikhonov regularization, we develop a method to estimate a dense orientation field in the tangent space of a surface described by a triangulated mesh, in the direction of its folds. We then use this orientation field to distinguish between shape differences in the direction parallel to folds and those in the direction across them. We test the method quantitatively on synthetic data and qualitatively on a database consisting of segmented cortical surfaces of 92 healthy subjects and 97 subjects with Alzheimer’s disease. The method estimates the correct fold directions and also indicates that the healthy and diseased subjects are distinguished by shape differences that are in the direction perpendicular to the underlying hippocampi, a finding which is consistent with the neuroscientific literature. These results demonstrate the importance of direction specific computational methods for shape analysis.

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References

  1. Van Essen, D.: A tension-based theory of morphogenesis and compact wiring in the central nervous system. Nature 385, 313–318 (1997)

    Article  Google Scholar 

  2. Buckner, R.: Memory and Executive Function in Aging and AD Multiple Factors that Cause Decline and Reserve Factors that Compensate. Neuron 44(1), 195–208 (2004)

    Article  Google Scholar 

  3. Chung, M., Worsley, K., Robbins, S., Paus, T., Taylor, J., Giedd, J., Rapoport, J., Evans, A.: Deformation-based surface morphometry applied to gray matter deformation. NeuroImage 18(2), 198–213 (2003)

    Article  Google Scholar 

  4. Fischl, B., Sereno, M., Dale, A.: Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system. Neuroimage 9(2), 195–207 (1999)

    Article  Google Scholar 

  5. Toga, A., Thompson, P.: Mapping brain asymmetry. Nature Reviews Neuroscience 4(1), 37–48 (2003)

    Article  Google Scholar 

  6. Fillard, P., Arsigny, V., Ayache, N., Pennec, X.: A Riemannian Framework for the Processing of Tensor-Valued Images. In: Fogh Olsen, O., Florack, L.M.J., Kuijper, A. (eds.) DSSCV 2005. LNCS, vol. 3753, pp. 112–123. Springer, Heidelberg (2005)

    Chapter  Google Scholar 

  7. Lepore, N., Brun, C., Chou, Y., Chiang, M., Dutton, R., Hayashi, K., Luders, E., Lopez, O., Aizenstein, H., Toga, A., et al.: Generalized Tensor-Based Morphometry of HIV/AIDS Using Multivariate Statistics on Deformation Tensors. IEEE Transactions on Medical Imaging 27(1), 129–141 (2008)

    Article  Google Scholar 

  8. Tang, B., Sapiro, G., Caselles, V.: Diffusion of General Data on Non-Flat Manifolds via Harmonic Maps Theory: The Direction Diffusion Case. International Journal of Computer Vision 36(2), 149–161 (2000)

    Article  Google Scholar 

  9. Perona, P.: Orientation diffusions. IEEE Image Processing 7, 457–467 (1998)

    Article  Google Scholar 

  10. Kimmel, R., Sochen, N.: Orientation Diffusion or How to Comb a Porcupine. Visual Com. and Image Representation 13(1-2), 238–248 (2002)

    Article  Google Scholar 

  11. Hirani, A.: Discrete exterior calculus. PhD thesis, California Institute of Technology (2003)

    Google Scholar 

  12. Grinspun, E., Gingold, Y., Reisman, J., Zorin, D.: Computing discrete shape operators on general meshes. In: Computer Graphics Forum, vol. 25, pp. 547–556. Blackwell Synergy, Malden (2006)

    Google Scholar 

  13. Lyttelton, O., Boucher, M., Robbins, S., Evans, A.: An unbiased iterative group registration template for cortical surface analysis. Neuroimage 34(4), 1535–1544 (2007)

    Article  Google Scholar 

  14. Worsley, K., Andermann, M., Koulis, T., MacDonald, D., Evans, A.: Detecting changes in nonisotropic images. Human Brain Mapping 8(2-3), 98–101 (1999)

    Article  Google Scholar 

  15. Fisher, M., Springborn, B., Schröder, P., Bobenko, A.: An algorithm for the construction of intrinsic delaunay triangulations with applications to digital geometry processing. Computing 81(2), 199–213 (2007)

    Article  MathSciNet  MATH  Google Scholar 

  16. Marcus, D., Wang, T., Parker, J., Csernansky, J., Morris, J., Buckner, R.: Open Access Series of Imaging Studies (OASIS): Cross-sectional MRI Data in Young, Middle Aged, Nondemented, and Demented Older Adults. Journal of Cognitive Neuroscience 19(9), 1498–1507 (2007)

    Article  Google Scholar 

  17. Boucher, M., Whitesides, S., Evans, A.: Depth potential function for folding pattern representation, registration and analysis. Medical Image Analysis (2008)

    Google Scholar 

  18. Kim, J., Singh, V., Lee, J., Lerch, J., Ad-Dabbagh, Y., MacDonald, D., Lee, J., Kim, S., Evans, A.: Automated 3-D extraction and evaluation of the inner and outer cortical surfaces using a Laplacian map and partial volume effect classification. Neuroimage 27, 210–221 (2005)

    Article  Google Scholar 

  19. Cabral, B., Leedom, L.: Imaging vector fields using line integral convolution. In: Proceedings of the 20th annual conference on Computer graphics and interactive techniques, pp. 263–270. ACM, New York (1993)

    Google Scholar 

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© 2009 Springer-Verlag Berlin Heidelberg

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Boucher, M., Evans, A., Siddiqi, K. (2009). Oriented Morphometry of Folds on Surfaces. In: Prince, J.L., Pham, D.L., Myers, K.J. (eds) Information Processing in Medical Imaging. IPMI 2009. Lecture Notes in Computer Science, vol 5636. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-02498-6_51

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  • DOI: https://doi.org/10.1007/978-3-642-02498-6_51

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-02497-9

  • Online ISBN: 978-3-642-02498-6

  • eBook Packages: Computer ScienceComputer Science (R0)

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