Abstract
Up-to-date results on the application of Markov models to chromosome analysis are presented. On the one hand, this means using continuous Hidden Markov Models (HMMs) instead of discrete models. On the other hand, this also means to conduct empirical tests on the same large chromosome datasets that are currently used to evaluate state-of-the-art classifiers. It is shown that the use of continuous HMMs allows to obtain error rates that are very close to those provided by the most accurate classifiers.
Work supported by the Valencian “Oficina de Ciència i Tecnologia” under grant CTIDIA/2002/80, the Spanish “Ministerio de Ciencia y Tecnología” under grant TIC2000-1703-CO3-01 and the Argentinian “Ministerio de Educación de la Nación” under fellowship FOMEC 1108.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Doménech, J., Toselli, A.H., Juan, A., Vidal, E., Casacuberta, F.: An off-line HTK-based OCR, system for isolated handwritten lowercase letters. In: Proc. of the IX Spanish Symposium on Pattern Recognition and Image Analysis, Benicàssim (Spain), May 2001, vol. II, pp. 49–54 (2001)
García, H.: Preproceso y extracción de características (sintáctica) para el diseño de clasificadores de cromosomas humanos. Master’s thesis, Faculty of Computer Science, Polytechnic University of Valencia (1999)
Gregor, J., Thomason, M.G.: A Disagreement Count Scheme for Inference of Constrained Markov Networks. In: Miclet, L., de la Higuera, C. (eds.) ICGI 1996. LNCS, vol. 1147, pp. 168–178. Springer, Heidelberg (1996)
Juan, A., et al.: Integrated Handwriting Recognition and Interpretation via FiniteState Models. Technical Report ITI-ITE-01/1, Institut Tecnològic d’Informàtica, Valencia (Spain) (July 2001)
Martínez, C., Juan, A., Casacuberta, F.: Using Recurrent Neural Networks for Automatic Chromosome Classification. In: Dorronsoro, J.R. (ed.) ICANN 2002. LNCS, vol. 2415, pp. 565–570. Springer, Heidelberg (2002)
Bitter, G., Schreib, G.: Using dominant points and variants for profile extraction from chromosomes. Pattern Recognition 34, 923–938 (2001)
Thomason, M.G., Granum, E.: Dynamic Programming Inference of Markov Networks from Finite Sets of Sample Strings. IEEE Trans. on PAMI, PAMI- 8(4), 491–501 (1986)
Young, S.J., et al.: HTK: Hidden Markov Model Toolkit. Technical report, Entropic Research Laboratories Inc. (1997)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2003 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Martínez, C., García, H., Juan, A., Casacuberta, F. (2003). Chromosome Classification Using Continuous Hidden Markov Models. In: Perales, F.J., Campilho, A.J.C., de la Blanca, N.P., Sanfeliu, A. (eds) Pattern Recognition and Image Analysis. IbPRIA 2003. Lecture Notes in Computer Science, vol 2652. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-44871-6_58
Download citation
DOI: https://doi.org/10.1007/978-3-540-44871-6_58
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-40217-6
Online ISBN: 978-3-540-44871-6
eBook Packages: Springer Book Archive