Abstract
Concerns about reproducibility in artificial intelligence (AI) have emerged, as researchers have reported unsuccessful attempts to directly reproduce published findings in the field. Replicability, the ability to affirm a finding using the same procedures on new data, has not been well studied. In this paper, we examine both reproducibility and replicability of a corpus of 16 papers on table structure recognition (TSR), an AI task aimed at identifying cell locations of tables in digital documents. We attempt to reproduce published results using codes and datasets provided by the original authors. We then examine replicability using a dataset similar to the original as well as a new dataset, GenTSR, consisting of 386 annotated tables extracted from scientific papers. Out of 16 papers studied, we reproduce results consistent with the original in only four. Two of the four papers are identified as replicable using the similar dataset under certain IoU values. No paper is identified as replicable using the new dataset. We offer observations on the causes of irreproducibility and irreplicability. All code and data are available on Codeocean at https://codeocean.com/capsule/6680116/tree.
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References
National Academies: Reproducibility and Replicability in Science. National Academies Press (2019). https://doi.org/10.17226/25303
Baker, M.: 1,500 scientists lift the lid on reproducibility. Nature 533(7604), 452–454 (2016). https://doi.org/10.1038/533452a
Camerer, C.F., et al.: Evaluating the replicability of social science experiments in nature and science between 2010 and 2015. Nat. Hum. Behav. 2(9), 637–644 (2018). https://doi.org/10.1038/s41562-018-0399-z
Collberg, C., Proebsting, T.A.: Repeatability in computer systems research. Commun. ACM 59(3), 62–69 (2016). https://doi.org/10.1145/2812803
Dutta, A., Zisserman, A.: The via annotation software for images, audio and video. In: Proceedings of the 27th ACM International Conference on Multimedia, pp. 2276–2279 (2019)
Fanelli, D.: Opinion: is science really facing a reproducibility crisis, and do we need it to? Proc. Natl. Acad. Sci. 115(11), 2628–2631 (2018). https://doi.org/10.1073/pnas.1708272114
Fischer, P., Smajic, A., Abrami, G., Mehler, A.: Multi-type-TD-TSR – extracting tables from document images using a multi-stage pipeline for table detection and table structure recognition: from OCR to structured table representations. In: Edelkamp, S., Möller, R., Rueckert, E. (eds.) KI 2021. LNCS (LNAI), vol. 12873, pp. 95–108. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-87626-5_8
Gao, L., et al.: ICDAR 2019 competition on table detection and recognition (CTDAR). In: 2019 International Conference on Document Analysis and Recognition (ICDAR), pp. 1510–1515 (2019). https://doi.org/10.1109/ICDAR.2019.00243
Gatos, B., Danatsas, D., Pratikakis, I., Perantonis, S.J.: Automatic table detection in document images. In: Singh, S., Singh, M., Apte, C., Perner, P. (eds.) ICAPR 2005. LNCS, vol. 3686, pp. 609–618. Springer, Heidelberg (2005). https://doi.org/10.1007/11551188_67
Göbel, M., Hassan, T., Oro, E., Orsi, G.: ICDAR 2013 table competition. In: 2013 12th International Conference on Document Analysis and Recognition, pp. 1449–1453 (2013). https://doi.org/10.1109/ICDAR.2013.292
Goodman, S.N., Fanelli, D., Ioannidis, J.P.: What does research reproducibility mean? Sci. Transl. Med. 8(341), 341ps12-341ps12 (2016)
Gundersen, O.E., Kjensmo, S.: State of the art: reproducibility in artificial intelligence. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 32 (2018)
Hashmi, K.A., Stricker, D., Liwicki, M., Afzal, M.N., Afzal, M.Z.: Guided table structure recognition through anchor optimization. IEEE Access 9, 113521–113534 (2021)
Jain, A., Paliwal, S., Sharma, M., Vig, L.: TSR-DSAW: table structure recognition via deep spatial association of words. In: 29th European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning, ESANN 2021, Online event (Bruges, Belgium), 6–8 October 2021 (2021). https://doi.org/10.14428/esann/2021.ES2021-109
Kamphuis, C., de Vries, A.P., Boytsov, L., Lin, J.: Which BM25 do you mean? A large-scale reproducibility study of scoring variants. In: Jose, J.M., et al. (eds.) ECIR 2020. LNCS, vol. 12036, pp. 28–34. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-45442-5_4
Khan, S.A., Khalid, S.M.D., Shahzad, M.A., Shafait, F.: Table structure extraction with bi-directional gated recurrent unit networks. In: 2019 International Conference on Document Analysis and Recognition (ICDAR), pp. 1366–1371. IEEE (2019)
Lee, E., Park, J., Koo, H.I., Cho, N.I.: Deep-learning and graph-based approach to table structure recognition. Multimedia Tools Appl. 81(4), 5827–5848 (2022)
Li, Y., et al.: Rethinking table structure recognition using sequence labeling methods. In: Lladós, J., Lopresti, D., Uchida, S. (eds.) ICDAR 2021. LNCS, vol. 12822, pp. 541–553. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-86331-9_35
Liu, C., Gao, C., Xia, X., Lo, D., Grundy, J.C., Yang, X.: On the reproducibility and replicability of deep learning in software engineering. ACM Trans. Softw. Eng. Methodol. 31(1), 15:1–15:46 (2022). https://doi.org/10.1145/3477535
McHugh, M.L.: Interrater reliability: the kappa statistic. Biochem. Med. 22(3), 276–82 (2012)
Musgrave, K., Belongie, S., Lim, S.-N.: A metric learning reality check. In: Vedaldi, A., Bischof, H., Brox, T., Frahm, J.-M. (eds.) ECCV 2020. LNCS, vol. 12370, pp. 681–699. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-58595-2_41
Nosek, B.A., et al.: Replicability, robustness, and reproducibility in psychological science. Ann. Rev. Psychol. 73(1), 719–748 (2022). https://doi.org/10.1146/annurev-psych-020821-114157. pMID: 34665669
Olorisade, B.K., Brereton, P., Andras, P.: Reproducibility of studies on text mining for citation screening in systematic reviews: evaluation and checklist. J. Biomed. Inform. 73, 1–13 (2017). https://doi.org/10.1016/j.jbi.2017.07.010
Pimentel, J.F., Murta, L., Braganholo, V., Freire, J.: A large-scale study about quality and reproducibility of jupyter notebooks. In: 2019 IEEE/ACM 16th International Conference on Mining Software Repositories (MSR), pp. 507–517. IEEE (2019). https://doi.org/10.1109/MSR.2019.00077
Pineau, J., et al.: Improving reproducibility in machine learning research. J. Mach. Learn. Res. 22, 7459–7478 (2021)
Prasad, D., Gadpal, A., Kapadni, K., Visave, M., Sultanpure, K.: Cascadetabnet: an approach for end to end table detection and structure recognition from image-based documents. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops, pp. 572–573 (2020)
Prenkaj, B., Velardi, P., Distante, D., Faralli, S.: A reproducibility study of deep and surface machine learning methods for human-related trajectory prediction. In: Proceedings of the 29th ACM International Conference on Information & Knowledge Management, CIKM 2020, pp. 2169–2172. Association for Computing Machinery, New York (2020). https://doi.org/10.1145/3340531.3412088
Qasim, S.R., Mahmood, H., Shafait, F.: Rethinking table recognition using graph neural networks. In: 2019 International Conference on Document Analysis and Recognition (ICDAR), pp. 142–147. IEEE (2019)
Qiao, L., et al.: LGPMA: complicated table structure recognition with local and global pyramid mask alignment. In: Lladós, J., Lopresti, D., Uchida, S. (eds.) ICDAR 2021. LNCS, vol. 12821, pp. 99–114. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-86549-8_7
Raff, E.: A step toward quantifying independently reproducible machine learning research. In: Advances in Neural Information Processing Systems, vol. 32 (2019)
Raja, S., Mondal, A., Jawahar, C.V.: Table structure recognition using top-down and bottom-up cues. In: Vedaldi, A., Bischof, H., Brox, T., Frahm, J.-M. (eds.) ECCV 2020. LNCS, vol. 12373, pp. 70–86. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-58604-1_5
Salsabil, L., et al.: A study of computational reproducibility using URLs linking to open access datasets and software. In: Companion Proceedings of the Web Conference 2022, WWW 2022, pp. 784–788. Association for Computing Machinery, New York (2022). https://doi.org/10.1145/3487553.3524658
Schreiber, S., Agne, S., Wolf, I., Dengel, A., Ahmed, S.: Deepdesrt: deep learning for detection and structure recognition of tables in document images. In: 2017 14th IAPR International Conference on Document Analysis and Recognition (ICDAR), vol. 1, pp. 1162–1167 (2017). https://doi.org/10.1109/ICDAR.2017.192
Seibold, H., et al.: A computational reproducibility study of PLOS ONE articles featuring longitudinal data analyses. PLoS ONE 16(6), 1–15 (2021). https://doi.org/10.1371/journal.pone.0251194
Siddiqui, S.A., Fateh, I.A., Rizvi, S.T.R., Dengel, A., Ahmed, S.: Deeptabstr: deep learning based table structure recognition. In: 2019 International Conference on Document Analysis and Recognition (ICDAR), pp. 1403–1409. IEEE (2019)
Stevens, L.M., Mortazavi, B.J., Deo, R.C., Curtis, L., Kao, D.P.: Recommendations for reporting machine learning analyses in clinical research. Circ. Cardiovasc. Qual. Outcomes 13(10), e006556 (2020). https://doi.org/10.1161/CIRCOUTCOMES.120.006556
Tatman, R., VanderPlas, J., Dane, S.: A practical taxonomy of reproducibility for machine learning research (2018)
Tensmeyer, C., Morariu, V.I., Price, B., Cohen, S., Martinez, T.: Deep splitting and merging for table structure decomposition. In: 2019 International Conference on Document Analysis and Recognition (ICDAR), pp. 114–121 (2019). https://doi.org/10.1109/ICDAR.2019.00027
Xue, W., Li, Q., Tao, D.: Res2tim: reconstruct syntactic structures from table images. In: 2019 International Conference on Document Analysis and Recognition (ICDAR), pp. 749–755 (2019). https://doi.org/10.1109/ICDAR.2019.00125
Xue, W., Yu, B., Wang, W., Tao, D., Li, Q.: TGRNet: a table graph reconstruction network for table structure recognition. In: Proceedings of the IEEE/CVF International Conference on Computer Vision, pp. 1295–1304 (2021)
Zheng, X., Burdick, D., Popa, L., Zhong, X., Wang, N.X.R.: Global table extractor (GTE): a framework for joint table identification and cell structure recognition using visual context. In: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, pp. 697–706 (2021)
Acknowledgment
This work was partially supported by the Defense Advanced Research Projects Agency (DARPA) under cooperative agreement No. W911NF-19-2-0272. The content of the information does not necessarily reflect the position or the policy of the Government, and no official endorsement should be inferred.
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Ajayi, K., Choudhury, M.H., Rajtmajer, S.M., Wu, J. (2023). A Study on Reproducibility and Replicability of Table Structure Recognition Methods. In: Fink, G.A., Jain, R., Kise, K., Zanibbi, R. (eds) Document Analysis and Recognition - ICDAR 2023. ICDAR 2023. Lecture Notes in Computer Science, vol 14188. Springer, Cham. https://doi.org/10.1007/978-3-031-41679-8_1
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