Weakly Supervised Segmentation by a Deep Geodesic Prior

Abstract

The performance of the state-of-the-art image segmentation methods heavily relies on the high-quality annotations, which are not easily affordable, particularly for medical data. To alleviate this limitation, in this study, we propose a weakly supervised image segmentation method based on a deep geodesic prior. We hypothesize that integration of this prior information can reduce the adverse effects of weak labels in segmentation accuracy. Our proposed algorithm is based on a prior information, extracted from an auto-encoder, trained to map objects’ geodesic maps to their corresponding binary maps. The obtained information is then used as an extra term in the loss function of the segmentor. In order to show efficacy of the proposed strategy, we have experimented segmentation of cardiac substructures with clean and two levels of noisy labels (L1, L2). Our experiments showed that the proposed algorithm boosted the performance of baseline deep learning-based segmentation for both clean and noisy labels by $4.4\%$, $4.6\%$(L1), and $6.3\%$(L2) in dice score, respectively. We also showed that the proposed method was more robust in the presence of high-level noise due to the existence of shape priors.

A. Mortazi—This work was done partially during internship at Boston Children’s Hospital under the supervision of Dr. Kurugol and was supported partially by Crohns and Colitis Foundation of Americas (CCFA) Career Development Award and AGA-Boston Scientific Technology and Innovation Award.