Skip to main content

Targeting S100 Calcium-Binding Proteins with Small Molecule Inhibitors

  • Protocol
  • First Online:
Calcium-Binding Proteins of the EF-Hand Superfamily

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1929))

Abstract

S100B is a small, dimeric, calcium-binding protein that is implicated in various diseases, most significantly cancer; therefore, there is interest in identifying S100B inhibitors that may have therapeutic value (Bresnick et al. Nat Rev Cancer 15:96–109, 2015; Chong et al. Curr Med Chem 23:1571–1596). Two fluorescence polarization competition assays (FPCA) are described here for S100B and S100A1 that are amenable to high-throughput screening (HTS) campaigns and can be used to determine the binding affinity (K i) of the inhibitors. One FPCA is used to identify and characterize inhibitors of S100B with the aim of finding new therapeutics, and the other was developed as a counter-screen to avoid inhibitors of S100A1 due to its role in regulating skeletal and cardiac muscle function. Also outlined are methods for expressing and purifying S100B and S100A1 in quantities needed for performing large HTS campaigns.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Bresnick AR, Weber DJ, Zimmer DB (2015) S100 proteins in cancer. Nat Rev Cancer 15(2):96–109. https://doi.org/10.1038/nrc3893

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Chong ZZ, Changyaleket B, Xu H, Dull RO, Schwartz DE (2016) Identifying S100B as a biomarker and a therapeutic target for brain injury and multiple diseases. Curr Med Chem 23(15):1571–1596

    Article  CAS  Google Scholar 

  3. Wilder PT, Lin J, Bair CL, Charpentier TH, Yang D, Liriano M, Varney KM, Lee A, Oppenheim AB, Adhya S, Carrier F, Weber DJ (2006) Recognition of the tumor suppressor protein p53 and other protein targets by the calcium-binding protein S100B. Biochim Biophys Acta 1763(11):1284–1297. https://doi.org/10.1016/j.bbamcr.2006.08.024

    Article  CAS  PubMed  Google Scholar 

  4. Hartman KG, Vitolo MI, Pierce AD, Fox JM, Shapiro P, Martin SS, Wilder PT, Weber DJ (2014) Complex formation between S100B protein and the p90 ribosomal S6 kinase (RSK) in malignant melanoma is calcium-dependent and inhibits extracellular signal-regulated kinase (ERK)-mediated phosphorylation of RSK. J Biol Chem 289(18):12886–12895. https://doi.org/10.1074/jbc.M114.561613

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Wang H, Zhang L, Zhang IY, Chen X, Da Fonseca A, Wu S, Ren H, Badie S, Sadeghi S, Ouyang M, Warden CD, Badie B (2013) S100B promotes glioma growth through chemoattraction of myeloid-derived macrophages. Clin Cancer Res 19(14):3764–3775. https://doi.org/10.1158/1078-0432.CCR-12-3725

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Prosser BL, Wright NT, Hernandez-Ochoa EO, Varney KM, Liu Y, Olojo RO, Zimmer DB, Weber DJ, Schneider MF (2008) S100A1 binds to the calmodulin-binding site of ryanodine receptor and modulates skeletal muscle excitation-contraction coupling. J Biol Chem 283(8):5046–5057. https://doi.org/10.1074/jbc.M709231200

    Article  CAS  PubMed  Google Scholar 

  7. Wright NT, Prosser BL, Varney KM, Zimmer DB, Schneider MF, Weber DJ (2008) S100A1 and calmodulin compete for the same binding site on ryanodine receptor. J Biol Chem 283(39):26676–26683. https://doi.org/10.1074/jbc.M804432200

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Cannon BR, Zimmer DB, Weber DJ (2011) S100A1 (S100 calcium binding protein A1). Atlas Genet Cytogenet Oncol Haematol 15(10):873–876. https://doi.org/10.4267/2042/46035

    Article  PubMed  PubMed Central  Google Scholar 

  9. Hall MD, Yasgar A, Peryea T, Braisted JC, Jadhav A, Simeonov A, Coussens NP (2016) Fluorescence polarization assays in high-throughput screening and drug discovery: a review. Methods Appl Fluoresc 4(2):022001. https://doi.org/10.1088/2050-6120/4/2/022001

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Huang X, Aulabaugh A (2016) Application of fluorescence polarization in HTS assays. Methods Mol Biol 1439:115–130. https://doi.org/10.1007/978-1-4939-3673-1_7

    Article  CAS  PubMed  Google Scholar 

  11. Wilder PT, Charpentier TH, Liriano MA, Gianni K, Varney KM, Pozharski E, Coop A, Toth EA, Mackerell AD, Weber DJ (2010) In vitro screening and structural characterization of inhibitors of the S100B-p53 interaction. Int J High Throughput Screen 2010(1):109–126. https://doi.org/10.2147/IJHTS.S8210

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Ivanenkov VV, Jamieson GA Jr, Gruenstein E, Dimlich RV (1995) Characterization of S-100b binding epitopes. Identification of a novel target, the actin capping protein, CapZ. J Biol Chem 270(24):14651–14658

    Article  CAS  Google Scholar 

  13. Nikolovska-Coleska Z, Wang R, Fang X, Pan H, Tomita Y, Li P, Roller PP, Krajewski K, Saito NG, Stuckey JA, Wang S (2004) Development and optimization of a binding assay for the XIAP BIR3 domain using fluorescence polarization. Anal Biochem 332(2):261–273. https://doi.org/10.1016/j.ab.2004.05.055

    Article  CAS  PubMed  Google Scholar 

  14. Cheng Y, Prusoff WH (1973) Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction. Biochem Pharmacol 22(23):3099–3108

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to David J. Weber .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Wilder, P.T., Varney, K.M., Weber, D.J. (2019). Targeting S100 Calcium-Binding Proteins with Small Molecule Inhibitors. In: Heizmann, C. (eds) Calcium-Binding Proteins of the EF-Hand Superfamily. Methods in Molecular Biology, vol 1929. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-9030-6_19

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-9030-6_19

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-9029-0

  • Online ISBN: 978-1-4939-9030-6

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics