Abstract
The bacterial adenylate cyclase two-hybrid system (BACTH) is a genetic approach used to test protein interactions in vivo in E. coli. This system takes advantage of the two catalytic domains of Bordetella pertussis adenylate cyclase (CyaA) toxin, which can be fused separately to proteins of interest. If the proteins of interest interact, then the adenylate cyclase domains will be brought in close proximity to each other, reconstituting cyclic AMP (cAMP) production. Interacting proteins can be both qualitatively and quantitatively assessed by the expression of chromosomal genes of the E. coli lac or mal operon, which are positively regulated by cAMP production. Because cAMP is diffusible, the proteins of interest do not need to interact near the transcriptional machinery. Consequently, both cytosolic and membrane protein–protein interactions can be tested. The BACTH system has recently been modified to be compatible with Gateway® recombinational cloning, BACTHGW. This chapter explains the principle of the BACTH, its Gateway® modified system, and details of the general procedure.
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References
Fields S, O-k S (1989) A novel genetic system to detect protein–protein interactions. Nature 340(6230):245–246
Stynen B, Tournu H, Tavernier J, Van Dijck P (2012) Diversity in genetic in vivo methods for protein-protein interaction studies: from the yeast two-hybrid system to the mammalian split-luciferase system. Microbiol Mol Biol Rev 76(2):331–382. https://doi.org/10.1128/mmbr.05021-11
Karimova G, Ullmann A, Ladant D (2000) A bacterial two-hybrid system that exploits a cAMP signaling cascade in Escherichia coli. Methods Enzymol 328:59–73
Gyuris J, Golemis E, Chertkov H, Brent R (1993) Cdi1, a human G1 and S phase protein phosphatase that associates with Cdk2. Cell 75(4):791–803
Ladant D, Ullmann A (1999) Bordatella pertussis adenylate cyclase: a toxin with multiple talents. Trends Microbiol 7(4):172–176
Karimova G, Pidoux J, Ullmann A, Ladant D (1998) A bacterial two-hybrid system based on a reconstituted signal transduction pathway. Proc Natl Acad Sci U S A 95(10):5752–5756
Busby S, Ebright RH (1999) Transcription activation by catabolite activator protein (CAP). J Mol Biol 293(2):199–213
Karimova G, Dautin N, Ladant D (2005) Interaction network among Escherichia coli membrane proteins involved in cell division as revealed by bacterial two-hybrid analysis. J Bacteriol 187(7):2233–2243. https://doi.org/10.1128/jb.187.7.2233-2243.2005
Jack RL, Buchanan G, Dubini A, Hatzixanthis K, Palmer T, Sargent F (2004) Coordinating assembly and export of complex bacterial proteins. EMBO J 23(20):3962–3972. https://doi.org/10.1038/sj.emboj.7600409
Cisneros DA, Bond PJ, Pugsley AP, Campos M, Francetic O (2012) Minor pseudopilin self-assembly primes type II secretion pseudopilus elongation. EMBO J 31(4):1041–1053. https://doi.org/10.1038/emboj.2011.454
Gauliard E, Ouellette SP, Rueden KJ, Ladant D (2015) Characterization of interactions between inclusion membrane proteins from Chlamydia trachomatis. Front Cell Infect Microbiol 5:13. https://doi.org/10.3389/fcimb.2015.00013
Georgiadou M, Castagnini M, Karimova G, Ladant D, Pelicic V (2012) Large-scale study of the interactions between proteins involved in type IV pilus biology in Neisseria meningitidis: characterization of a subcomplex involved in pilus assembly. Mol Microbiol 84(5):857–873. https://doi.org/10.1111/j.1365-2958.2012.08062.x
Zoued A, Durand E, Brunet YR, Spinelli S, Douzi B, Guzzo M, Flaugnatti N, Legrand P, Journet L, Fronzes R, Mignot T, Cambillau C, Cascales E (2016) Priming and polymerization of a bacterial contractile tail structure. Nature 531(7592):59–63. https://doi.org/10.1038/nature17182
Ouellette SP, Gauliard E, Antosova Z, Ladant D (2014) A Gateway((R))-compatible bacterial adenylate cyclase-based two-hybrid system. Environ Microbiol Rep 6(3):259–267. https://doi.org/10.1111/1758-2229.12123
Lawson CL, Swigon D, Murakami KS, Darst SA, Berman HM, Ebright RH (2004) Catabolite activator protein: DNA binding and transcription activation. Curr Opin Struct Biol 14(1):10–20. https://doi.org/10.1016/j.sbi.2004.01.012
Karimova G, Ullmann A, Ladant D (2001) Protein-protein interaction between Bacillus stearothermophilus tyrosyl-tRNA synthetase subdomains revealed by a bacterial two-hybrid system. J Mol Microbiol Biotechnol 3(1):73–82
Dautin N, Karimova G, Ladant D (2003) Human immunodeficiency virus (HIV) type 1 transframe protein can restore activity to a dimerization-deficient HIV protease variant. J Virol 77(15):8216–8226
Battesti A, Bouveret E (2012) The bacterial two-hybrid system based on adenylate cyclase reconstitution in Escherichia coli. Methods (San Diego, Calif) 58(4):325–334. https://doi.org/10.1016/j.ymeth.2012.07.018
Fransen M, Brees C, Ghys K, Amery L, Mannaerts GP, Ladant D, Van Veldhoven PP (2002) Analysis of mammalian peroxin interactions using a non-transcription-based bacterial two-hybrid assay. Mol Cell Proteomics 1(3):243–252
Ouellette SP, Rueden KJ, Gauliard E, Persons L, de Boer PA, Ladant D (2014) Analysis of MreB interactors in Chlamydia reveals a RodZ homolog but fails to detect an interaction with MraY. Front Microbiol 5:279. https://doi.org/10.3389/fmicb.2014.00279
Dautin N, Karimova G, Ullmann A, Ladant D (2000) Sensitive genetic screen for protease activity based on a cyclic AMP signaling cascade in Escherichia coli. J Bacteriol 182(24):7060–7066
Ouellette SP, Karimova G, Subtil A, Ladant D (2012) Chlamydia co-opts the rod shape-determining proteins MreB and Pbp2 for cell division. Mol Microbiol 85(1):164–178. https://doi.org/10.1111/j.1365-2958.2012.08100.x
Hartley JL, Temple GF, Brasch MA (2000) DNA cloning using in vitro site-specific recombination. Genome Res 10(11):1788–1795
Sands B, Brent R (2015) Overview of post Cohen-Boyer methods for single segment cloning and for multisegment DNA assembly. Curr Protoc Mol Biol 113:3.26.1–23.26.20
Sambrook J, Russell DW (2006) The condensed protocols from molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
Kramer M, Coen D (2001) Enzymatic amplification of DNA by PCR: standard procedures and optimization. Curr Protoc Immunol Chapter10:Unit 10.20
Karimova G, Davi M, Ladant D (2012) The beta-lactam resistance protein Blr, a small membrane polypeptide, is a component of the Escherichia coli cell division machinery. J Bacteriol 194(20):5576–5588. https://doi.org/10.1128/jb.00774-12
Karimova G, Robichon C, Ladant D (2009) Characterization of YmgF, a 72-residue inner membrane protein that associates with the Escherichia coli cell division machinery. J Bacteriol 191(1):333–346. https://doi.org/10.1128/jb.00331-08
Wilson K (2001) Preparation of genomic DNA from bacteria. Curr Protoc Mol Biol Chapter 2:Unit 2.4
Ouellette SP, Karimova G, Davi M, Ladant D (2017) Analysis of membrane protein interactions with a bacterial adenylate cyclase-based two-hybrid (BACTH) technique. Curr Protoc Mol Biol 118:20.12.21–20.12.24. https://doi.org/10.1002/cpmb.36
Zervos AS, Gyuris J, Brent R (1993) Mxi1, a protein that specifically interacts with Max to bind Myc-Max recognition sites. Cell 72(2):223–232
Miller J (1993) A short course in bacterial genetics: a laboratory manual and handbook for Escherichia coli and related bacteria. Trends Biochem Sci 18:193
Nichols NM (2011) Endonucleases. Curr Protoc Mol Biol Chapter 3:Unit 3.12
Kucera RB, Nichols NM (2008) DNA-dependent DNA polymerases. Curr Protoc Mol Biol Chapter 3:3.5.1–3.5.19
Bloch KD, Grossmann B (1995) Digestion of DNA with restriction endonucleases. Curr Protoc Mol Biol Chapter 3:3.1.1–3.1.21
Voytas D (2001) Agarose gel electrophoresis. Curr Protoc Mol Biol. https://doi.org/10.1002/0471142727.mb0205as51
Chen AL, Johnson KA, Lee JK, Sutterlin C, Tan M (2012) CPAF: a Chlamydial protease in search of an authentic substrate. PLoS Pathog 8(8):e1002842. https://doi.org/10.1371/journal.ppat.1002842
Kleinschnitz EM, Heichlinger A, Schirner K, Winkler J, Latus A, Maldener I, Wohlleben W, Muth G (2011) Proteins encoded by the mre gene cluster in Streptomyces coelicolor A3 (2) cooperate in spore wall synthesis. Mol Microbiol 79(5):1367–1379
Houot L, Fanni A, de Bentzmann S, Bordi C (2012) A bacterial two-hybrid genome fragment library for deciphering regulatory networks of the opportunistic pathogen Pseudomonas aeruginosa. Microbiology 158(8):1964–1971
Pfeiffer D, Jendrossek D (2011) Interaction between poly (3-hydroxybutyrate) granule-associated proteins as revealed by two-hybrid analysis and identification of a new phasin in Ralstonia eutropha H16. Microbiology 157(10):2795–2807
Griffith KL, Wolf RE Jr (2002) Measuring beta-galactosidase activity in bacteria: cell growth, permeabilization, and enzyme assays in 96-well arrays. Biochem Biophys Res Commun 290(1):397–402. https://doi.org/10.1006/bbrc.2001.6152
Naumovski L (2001) Two-hybrid interactions confirmed by coimmunoprecipitation of epitope-tagged clones. In: MacDonald PN (ed) Two-hybrid systems: methods and protocols. Humana Press, Totowa, pp 151–159. https://doi.org/10.1385/1-59259-210-4:151
Kraichely DM, MacDonald PN (2001) Confirming yeast two-hybrid protein interactions using in vitro glutathione-S-transferase pulldowns. In: MacDonald PN (ed) Two-hybrid systems: methods and protocols. Humana Press, Totowa, pp 135–150. https://doi.org/10.1385/1-59259-210-4:135
Robichon C, Karimova G, Beckwith J, Ladant D (2011) Role of leucine zipper motifs in association of the Escherichia coli cell division proteins FtsL and FtsB. J Bacteriol 193(18):4988–4992. https://doi.org/10.1128/jb.00324-11
Battesti A, Bouveret E (2008) Improvement of bacterial two-hybrid vectors for detection of fusion proteins and transfer to pBAD-tandem affinity purification, calmodulin binding peptide, or 6-histidine tag vectors. Proteomics 8(22):4768–4771. https://doi.org/10.1002/pmic.200800270
Acknowledgments
This work was supported in part by the University of South Dakota, Sanford School of Medicine, Division of Basic Biomedical Sciences, the University of Nebraska Medical Center, and by the Institut Pasteur and the Centre National de la Recherche Scientifique (CNRS UMR 3528, Biologie Structurale et Agents Infectieux). S.P.O. is supported by an award (1R35GM124798-01) from NIGMS/NIH.
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Olson, M.G., Goldammer, M., Gauliard, E., Ladant, D., Ouellette, S.P. (2018). A Bacterial Adenylate Cyclase-Based Two-Hybrid System Compatible with Gateway® Cloning. In: Oñate-Sánchez, L. (eds) Two-Hybrid Systems. Methods in Molecular Biology, vol 1794. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7871-7_6
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