Abstract
Optical tweezers permit measuring motor–filament rupture forces with piconewton sensitivity. For deeper structural and mechanistic understanding of motors, different structural constraints can be induced by pulling motor proteins at various positions and manipulating the direction of the exerted force. Here, we present an optical-trapping approach to investigate the effect of the magnitude and direction of tension applied to the linker element of cytoskeletal motors on motor–filament interactions. Using this approach, force-dependent microtubule release rates of monomeric kinesins can be directly measured by pulling on kinesin’s “neck linker” with a constant force.
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References
Hirokawa N, Noda Y, Tanaka Y, Niwa S (2009) Kinesin superfamily motor proteins and intracellular transport. Nat Rev Mol Cell Biol 10:682–696. doi:10.1038/nrm2774
Vallee RB, Williams JC, Varma D, Barnhart LE (2004) Dynein: an ancient motor protein involved in multiple modes of transport. J Neurobiol 58:189–200. doi:10.1002/neu.10314
Belyy V, Yildiz A (2014) Processive cytoskeletal motors studied with single-molecule fluorescence techniques. FEBS Lett 588:3520–3525. doi:10.1016/j.febslet.2014.05.040
Hua W, Young EC, Fleming ML, Gelles J (1997) Coupling of kinesin steps to ATP hydrolysis. Nature 388:390–393. doi:10.1038/41118
Schnitzer MJ, Block SM (1997) Kinesin hydrolyses one ATP per 8-nm step. Nature 388:386–390. doi:10.1038/41111
Guydosh NR, Block SM (2006) Backsteps induced by nucleotide analogs suggest the front head of kinesin is gated by strain. Proc Natl Acad Sci U S A 103:8054–8059. doi:10.1073/pnas.0600931103
Shastry S, Hancock WO (2010) Neck linker length determines the degree of processivity in kinesin-1 and kinesin-2 motors. Curr Biol 20:939–943. doi:10.1016/j.cub.2010.03.065
Yildiz A, Tomishige M, Gennerich A, Vale RD (2008) Intramolecular strain coordinates kinesin stepping behavior along microtubules. Cell 134:1030–1041. doi:10.1016/j.cell.2008.07.018
Clancy BE, Behnke-Parks WM, Andreasson JOL et al (2011) A universal pathway for kinesin stepping. Nat Struct Mol Biol 18:1020–1027. doi:10.1038/nsmb.2104
Rosenfeld SS, Jefferson GM, King PH (2001) ATP reorients the neck linker of kinesin in two sequential steps. J Biol Chem 276:40167–40174. doi:10.1074/jbc.M103899200
Hyeon C, Onuchic JN (2007) Internal strain regulates the nucleotide binding site of the kinesin leading head. Proc Natl Acad Sci U S A 104:2175–2180. doi:10.1073/pnas.0610939104
Dogan MY, Can S, Cleary FB et al (2016) Kinesin’s front head is gated by the backward orientation of its neck linker. Cell Rep 10:1967–1973. doi:10.1016/j.celrep.2015.02.061
Cleary FB, Dewitt MA, Bilyard T et al (2014) Tension on the linker gates the ATP-dependent release of dynein from microtubules. Nat Commun 5:4587. doi:10.1038/ncomms5587
Guydosh NR, Block SM (2009) Direct observation of the binding state of the kinesin head to the microtubule. Nature 461:125–128. doi:10.1038/nature08259
Dudko OK, Hummer G, Szabo A (2008) Theory, analysis, and interpretation of single-molecule force spectroscopy experiments. Proc Natl Acad Sci U S A 105:15755–15760. doi:10.1073/pnas.0806085105
Capitanio M, Canepari M, Maffei M et al (2012) Ultrafast force-clamp spectroscopy of single molecules reveals load dependence of myosin working stroke. Nat Methods 9:1013–1019. doi:10.1038/nmeth.2152
Nicholas MP, Berger F, Rao L et al (2015) Cytoplasmic dynein regulates its attachment to microtubules via nucleotide state-switched mechanosensing at multiple AAA domains. Proc Natl Acad Sci U S A 112:6371–6376. doi:10.1073/pnas.1417422112
Hyman AA (1991) Preparation of marked microtubules for the assay of the polarity of microtubule-based motors by fluorescence. J Cell Sci Suppl 14:125–127
Rice S, Lin AW, Safer D et al (1999) A structural change in the kinesin motor protein that drives motility. Nature 402:778–784. doi:10.1038/45483
Mori T, Vale RD, Tomishige M (2007) How kinesin waits between steps. Nature 450:750–754. doi:10.1038/nature06346
Tomishige M, Stuurman N, Vale RD (2006) Single-molecule observations of neck linker conformational changes in the kinesin motor protein. Nat Struct Mol Biol 13:887–894. doi:10.1038/nsmb1151
Stock MF, Hackney DD (2001) Expression of kinesin in Escherichia coli. Methods Mol Biol 164:43–48
Bornhorst JA, Falke JJ (2000) Purification of proteins using polyhistidine affinity tags. Methods Enzymol 326:245–254
Tomishige M, Vale RD (2000) Controlling kinesin by reversible disulfide cross-linking. Identifying the motility-producing conformational change. J Cell Biol 151:1081–1092
Belyy V, Hendel NL, Chien A, Yildiz A (2014) Cytoplasmic dynein transports cargos via load-sharing between the heads. Nat Commun 5:5544. doi:10.1038/ncomms6544
Aitken CE, Marshall RA, Puglisi JD (2008) An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments. Biophys J 94:1826–1835. doi:10.1529/biophysj.107.117689
Neuman KC, Block SM (2004) Optical trapping. Rev Sci Instrum 75:2787–2809. doi:10.1063/1.1785844
Visscher K, Block SM (1998) Versatile optical traps with feedback control. Methods Enzymol 298:460–489
Schäffer E, Nørrelykke SF, Howard J (2007) Surface forces and drag coefficients of microspheres near a plane surface measured with optical tweezers. Langmuir 23:3654–3665. doi:10.1021/la0622368
Kalafut B, Visscher K (2008) An objective, model-independent method for detection of non-uniform steps in noisy signals. Comput Phys Commun 179:716–723. doi:10.1016/j.cpc.2008.06.008
Acknowledgements
We thank V. Belyy, for helpful discussions. This work was supported by a grant from the NIH (GM094522) and the NSF (MCB-1055017) to AY.
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Can, S., Yildiz, A. (2017). Measurement of Force-Dependent Release Rates of Cytoskeletal Motors. In: Gennerich, A. (eds) Optical Tweezers. Methods in Molecular Biology, vol 1486. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6421-5_18
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DOI: https://doi.org/10.1007/978-1-4939-6421-5_18
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