Abstract
The characterization of ice-binding proteins from plants can involve many techniques, only a few of which are presented here. Chief among these methods are tests for ice recrystallization inhibition activity. Two distinct procedures are described; neither is normally used for precise quantitative assays. Thermal hysteresis assays are used for quantitative studies but are also useful for ice crystal morphologies, which are important for the understanding of ice-plane binding. Once the sequence of interest is cloned, recombinant expression, necessary to verify ice-binding protein identity can present challenges, and a strategy for recovery of soluble, active protein is described. Lastly, verification of function in planta borrows from standard protocols, but with an additional screen applicable to ice-binding proteins. Here we have attempted to assist researchers wishing to isolate and characterize ice-binding proteins from plants with a few methods critical to success.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Xu W, Liu M, Shen X, Lu C (2005) Expression of a carrot 36 kD antifreeze protein gene improves cold stress tolerance in transgenic tobacco. Forest Stud China 7:11–16
Knight CA, Wen D, Laursen RA (1995) Nonequilibrium antifreeze peptides and the recrystallization of ice. Cryobiology 32:23–34
Sidebottom C, Buckley S, Pudney P, Twigg S, Jarman C, Holt C, Telford J, McArthur A, Worrall D, Hubbard R, Lillford P (2000) Heat-stable antifreeze protein from grass. Nature 406:256
Urrutia ME, Duman JG, Knight CA (1992) Plant thermal hysteresis proteins. Biochim Biophys Acta 1121:199–206
Duman JG (1994) Purification and characterization of a thermal hysteresis protein from a plant, the bittersweet nightshade Solanum dulcamara. Biochim Biophys Acta 1206:129–135
Hon W-C, Griffith M, Chong P, Yang DSC (1994) Extraction and isolation of antifreeze proteins from winter rye (Secale cereale L.) leaves. Plant Physiol 104:971–980
Huang T, Duman JG (1995) Purification and characterization of thermal hysteresis protein from cold-acclimated kale, Brassica oleracea. Cryobiology 32:577–581
Griffith M, Antikainen M, Hon W-C, Pihakaski-Maunsbach K, Yu X-M, Chun YU, Yang SC (1997) Antifreeze proteins in winter rye. Physiol Plant 100:327–332
Lu CF, Wang H, Jian LC, Kuang TY (1998) Progress in study of plant antifreeze proteins. Progr Biochem Biophys 25:210–216
Hoshino T, Odaira M, Yoshida M, Tsuda S (1992) Physiological and biochemical significance of antifreeze substances in plants. J Plant Res 112:255–261
Worrall D, Elias L, Ashford D, Smallwood M, Sidebottom C, Lillford P, Telford J, Holt C, Bowles D (1998) A carrot leucine-rich-repeat protein that inhibits ice recrystallization. Science 282:115–117
Aticia Ö, Nalbantoğlu B (2003) Antifreeze proteins in higher plants. Phytochemistry 64:1187–1196
Wang W, Wei L, Wang G (2003) Multistep purification of an antifreeze protein from Ammopiptanthus mongolicus by chromatographic and electrophoretic methods. J Chromat Sci 41:489–493
Moffatt B, Ewart V, Eastman A (2006) Cold comfort: plant antifreeze proteins. Physiol Plant 126:5–16
Zhang C, Zhang H, Wang L, Zhang J, Yao H (2007) Purification of antifreeze protein from wheat bran (Triticum aestivum L.) based on its hydrophilicity and ice-binding capacity. J Agric Food Chem 55:7654–7658
Cai Y, Liu S, Liao X, Ding Y, Sun J, Zhang D (2011) Purification and partial characterization of antifreeze proteins from leaves of Ligustrum lucidum Ait. Food Bioprod Process 89:98–102
Gupta R, Deswal R (2012) Low temperature stress modulated secretome analysis and purification of antifreeze protein from Hippophae rhamnoides, a Himalayan wonder plant. J Proteome Res 11:2684–2696
Lauersen KJ, Brown A, Middleton A, Davies PL, Walker VK (2011) Expression and characterization of an antifreeze protein from the perennial rye grass, Lolium perenne. Cryobiology 62:194–201
Tomczak MM, Marshall CB, Gilbert JA, Davies PL (2003) A facile method for determining ice recrystallization inhibition by antifreeze proteins. Biochem Biophys Res Commun 311:1041–1046
Scotter AJ, Marshall CB, Graham LA, Gilbert JA, Garnham CP, Davies PL (2006) The basis for hyperactivity of antifreeze proteins. Cryobiology 53:229–239
Takamichi M, Nishimiya Y, Miura A, Tsuda S (2007) Effect of annealing time of an ice crystal on the activity of type III antifreeze protein. FEBS J 274:6469–6476
Bar-Dolev M, Celik Y, Wettlaufer JS, Davies PL, Braslavsky I (2012) New insights into ice growth and melting modifications by antifreeze proteins. J R Soc Interface 9:3249–3259
Qin W, Tyshenko MG, Doucet D, Walker VK (2006) Characterization of antifreeze protein gene expression in summer spruce budworm larvae. Insect Biochem Mol Biol 36:210–218
Loughran ST, Wells D (2011) Purification of poly-histidine-tagged proteins. In protein chromatography: methods and protocols. Meth Mol Biol 681:311–335
Middleton AJ, Marshall CB, Faucher F, Bar-Dolev M, Braslavsky I, Campbell RL, Walker VK, Davies PL (2012) Antifreeze protein from freeze-tolerant grass has a beta-roll fold with an irregularly structured ice-binding site. J Mol Biol 416:713–724
Bent A (2006) Arabidopsis thaliana flora dip transformation method. In agrobacterium protocols. Meth Mol Biol 243:87–104
Møller HJ, Poulsen JH (2009) Staining of glycoproteins/proteoglycans on SDS gels. The protein protocols handbook. Springer Protocols Handbooks, Collana, pp 569–574
Jin S, Song YN, Deng WY, Gordon MP, Nester EW (1993) The regulatory VirA protein of Agrobacterium tumefaciens does not function at elevated temperatures. J Bacteriol 175:6830–6835
Acknowledgements
We would like to thank Dr. M. Kuiper, along with many undergraduate students who have participated in data collection and “trouble-shooting” these techniques over the years. The research was supported by a CIHR and NSERC (Canada) grants to PLD and VKW, respectively.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer Science+Business Media New York
About this protocol
Cite this protocol
Middleton, A.J., Vanderbeld, B., Bredow, M., Tomalty, H., Davies, P.L., Walker, V.K. (2014). Isolation and Characterization of Ice-Binding Proteins from Higher Plants. In: Hincha, D., Zuther, E. (eds) Plant Cold Acclimation. Methods in Molecular Biology, vol 1166. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-0844-8_19
Download citation
DOI: https://doi.org/10.1007/978-1-4939-0844-8_19
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-0843-1
Online ISBN: 978-1-4939-0844-8
eBook Packages: Springer Protocols