Skip to main content

Sequence Specificity and Biological Consequences of Drugs that Bind Covalently in the Minor Groove of DNA

  • Chapter
Mechanisms of DNA Damage and Repair

Part of the book series: Basic Life Sciences ((BLSC,volume 189))

Abstract

A variety of synthetic and naturally occurring DNA ligands have been shown to bind partially or totally within the minor groove of B-form DNA. The distamycins, netropsin, stilbamidine, and SN18071 all associate noncovalently with the minor groove1,2 while the intercalators adriamycin and actinoraycin have substituents which reside in the minor groove and stabilize their respective complexes. The pyrrolo(l,4)benzodiazepine [P(1,4)B] antitumor antibiotics, anthramycin, tomaymycin, and sibiromycin (see Figure 1) bind covalently in the minor groove to N2 of guanine.3,4 CC-1065, another antitumor antibiotic, binds covalently to N3 of adenine in the minor groove of DNA.5,6

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. C. Zimmer, Molecular Aspects of the Specific Interaction of Nonintercalatinq Oligopeptide Antibiotics with DNA, Comments Mol. Cell. Biophys., 1: 399 (1983).

    CAS  Google Scholar 

  2. B. Pullman, Electrostatics and Specificity in Nucleic Acid Reactions, in: Specificity in Biological Interactions, C. Chagas and B. Pullman, eds., The Vatican Press. (1984).

    Google Scholar 

  3. L.H. Hurley and R.L. Petrusek. Proposed Structure of the Anthramycin DNA Adduct, Nature, 282: 529 (1980).

    Article  Google Scholar 

  4. R.L. Petrusek, G.L. Anderson, T.F. Garner, Q.L. Fannin, D.J. Kaplan. S.G. Zimmer, and L.H. Hurley, Pyrrolo(l,4)Benzodiazepine Antiobitics, Proposed Structures and Characteristics of the in vitro DNA Adducts of Anthramycin, Tomaymycin, Sibiromycin and Neothramycins A and B, Biochemistry, 20: 1111 (1981).

    Article  CAS  Google Scholar 

  5. L.H. Hurley, V.L. Reynolds, D.H. Swenson, T. Scahill, Reaction of the Antitumor Antibiotic CC-1065 with DNA: Structure of a DNA Adduct with DNA Sequence Specificity, Science, 226: 843 (1984).

    Article  CAS  Google Scholar 

  6. V.L. Reynolds, I.J. Molineux, D.J. Kaplan, D.H. Swenson and L.H. Hurley, DNA Sequence Specificity of the Antitumor Antibiotic CC-1065, Biochemistry, in press (1985).

    Google Scholar 

  7. K. Zakrzewska, R. Lavery, and B. Pullman, The Solvation Contribution to the Binding Energy of DNA with Non-Intercalating Antibiotics, Nucleic Acids Research, 12: 6559 (1984).

    Article  CAS  Google Scholar 

  8. L.H. Hurley, C. Gairola and M.J. Zmijewski, Studies on the In Vitro Reactivity of the Pyrrolo(l,4)Benzodiazepine Antibiotics Towards DNA, Using Specifically Radiolabelled Molecules, Biochem. Biophys. Acta, 475: 5215 (1977).

    Google Scholar 

  9. D.E. Graves, C. Pattaroni, C. Balakrishnan, J.M. Ostrander. L.H. Hurley and T.R. Krugh, The Reaction of Anthramycin with DNA: Proton and Carbon Nuclear Magnetic Resonance Studies on the Structure of the Anthramycin-DNA Adduct, J. Biol. Chem. 259: 8202 (1984).

    CAS  Google Scholar 

  10. M. Barkley, S. Cheatham, D.E. Thurston and L.H. Hurley, Pyrrolo(l, 4)-Benzodiazepine Antitumor Antibiotics, Evidence for Two Forms of Tomaymycin Bound to DNA, Submitted for publication.

    Google Scholar 

  11. J.C. Dabrowiak, Sequence Specificity of Drug DNA Interactions, Life Sciences, 32: 2915 (1983).

    Article  CAS  Google Scholar 

  12. M.W. Van Dyke and P.B. Dervan, Methidium-EDTA-FE(II) and DNase I Foot-printing Report Different Small Molecule Binding Site Sizes on DNA, Nucleic Acids Res. 11: 5555 (1983).

    Article  Google Scholar 

  13. J.S. Taylor, P.G. Schultz and P.B. Dervan, DNA Affinity Cleaving, Sequence Specific Cleavage of DNA by Distamycin-EDTA-Fe(II) and EDTA-Distamycin-Fe(II), Tetrahedron, 40: 457 (1984).

    Article  CAS  Google Scholar 

  14. R.P. Hertzberg, S.M. Hecht, V.L. Reynolds, I.J. Molineux and L.H. Hurley, DNA Sequence Specificity of the Pyrrolo(l,4)Benzodiazepine Antitumor Antibiotics. MPE-Fe(II) Footprinting Analysis of DNA Binding Sites for Anthramycin and Related Drugs, Submitted for publication.

    Google Scholar 

  15. M.W. Van Dyke and P.B. Dervan, Footprinting with MPE-Fe(II). Complimentary-Strand Analysis of Distamycin and Actinomycin-Binding Sites on Heterogeneous DNA, Cold Spring Harbor Symposium on Quantitative Biology, 47: 347 (1983).

    Article  Google Scholar 

  16. D.R. Needham-VanDevanter, L.H. Hurley, V.L. Reynolds, N.Y. Theriault, W.C. Krueger and W. Wierenga, Characterization of an Adduct Between CC-1065 and a Defined Oligodeoxynucleotide Duplex, Nucleic Acids Research, 12: 6159 (1984).

    Article  CAS  Google Scholar 

  17. T.A. Scahill, unpublished results.

    Google Scholar 

  18. D.E. Graves, M.P. Stone and T.R. Krugh, Structure of the Anthramycin-d(ATGCAT), Adduct from One and Two Dimensional Proton NMR Experimentation in Solution, Biochemistry, in press (1985).

    Google Scholar 

  19. R.L. Petrusek, E.L. Uhlenhopp, N. Duteau and L.H. Hurley, Reaction of Anthramycin with DNA. Biological Consequences of DNA Damage in Normal and Xeroderma Pigmentosum Cell Lines, J. Biol. Chem. 257: 6207 (1982).

    CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1986 Plenum Press, New York

About this chapter

Cite this chapter

Hurley, L.H., Needham-VanDevanter, D.R. (1986). Sequence Specificity and Biological Consequences of Drugs that Bind Covalently in the Minor Groove of DNA. In: Simic, M.G., Grossman, L., Upton, A.C., Bergtold, D.S. (eds) Mechanisms of DNA Damage and Repair. Basic Life Sciences, vol 189. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-9462-8_21

Download citation

  • DOI: https://doi.org/10.1007/978-1-4615-9462-8_21

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4615-9464-2

  • Online ISBN: 978-1-4615-9462-8

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics