Abstract
Aberrant splicing of precursor messenger RNA (pre-mRNA) can generate abnormal transcripts, and most of the human diseases have been shown to associate with abnormal splicing of pre-mRNA. Conventional methods require sample lysis and thus cannot be used for monitoring pre-mRNA splicing in real time. This chapter guides how to develop an intron-retained bioluminescence (BL) reporter, which simulates the splicing process of pre-mRNA in vitro and in vivo noninvasively. In the following, we illustrate the design and construction of RLuc-intron and the methods of BL experiments in vitro and in vivo. The exemplified results show that our reporter is suitable for high-throughput screening of splicing inhibitors for the therapies of the diseases caused by aberrant splicing.
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References
Mezzanotte L, Van’t Root M, Karatas H, Goun EA, Löwik CWGM (2017) In vivo molecular bioluminescence imaging: new tools and applications. Trends Biotechnol 35(7):640–652. https://doi.org/10.1016/j.tibtech.2017.03.012
Smale ST (2010) Luciferase Assay. Cold Spring Harbor Protocols (5):pdb.prot5421. https://doi.org/10.1101/pdb.prot5421
Heidari P, Kunawudhi A, Martinez-Quintanilla J, Szretter A, Shah K, Mahmood U (2018) Somatostatin receptor type 2 as a radiotheranostic PET reporter gene for oncologic interventions. Theranostics 8(12):3380–3391. https://doi.org/10.7150/thno.24017
Matera AG, Wang Z (2014) A day in the life of the spliceosome. Nat Rev Mol Cell Biol 15(2):108–121. https://doi.org/10.1038/nrm3742
Martin-Tumasz S, Richie AC, Clos LJ 2nd, Brow DA, Butcher SE (2011) A novel occluded RNA recognition motif in Prp24 unwinds the U6 RNA internal stem loop. Nucleic Acids Res 39(17):7837–7847. https://doi.org/10.1093/nar/gkr455
Wang GS, Cooper TA (2007) Splicing in disease: disruption of the splicing code and the decoding machinery. Nat Rev Genet 8(10):749–761. https://doi.org/10.1038/nrg2164
Moore MJ, Silver PA (2008) Global analysis of mRNA splicing. RNA 14(2):197–203. https://doi.org/10.1261/rna.868008
Arnold SF, Melamed M, Vorojeikina DP, Notides AC, Sasson S (1997) Estradiol-binding mechanism and binding capacity of the human estrogen receptor is regulated by tyrosine phosphorylation. Mol Endocrinol 11(1):48–53
Awais M, Sato M, Umezawa Y (2007) Optical probes to identify the glucocorticoid receptor ligands in living cells. Steroids 72(14):949–954
Fujiwara N, Yoshikawa M, Yamazaki T, Kambe T, Nagao M, Masuda S (2010) A screening method tuned for mRNA processing factors in human cells by evaluation of the luciferase reporter activity and the subcellular distribution of bulk poly(a)+ RNA. Biosci Biotechnol Biochem 74(7):1512–1516. https://doi.org/10.1271/bbb.100363
Lee K, Cui Y, Lee LP, Irudayaraj J (2014) Quantitative imaging of single mRNA splice variants in living cells. Nat Nanotechnol 9(6):474–480. https://doi.org/10.1038/nnano.2014.73
Kotake Y, Sagane K, Owa T, Mimori-Kiyosue Y, Shimizu H, Uesugi M, Ishihama Y, Iwata M, Mizui Y (2007) Splicing factor SF3b as a target of the antitumor natural product pladienolide. Nat Chem Biol 3(9):570–575. https://doi.org/10.1038/nchembio.2007.16
Yokoi A, Kotake Y, Takahashi K, Kadowaki T, Matsumoto Y, Minoshima Y, Sugi NH, Sagane K, Hamaguchi M, Iwata M, Mizui Y (2011) Biological validation that SF3b is a target of the antitumor macrolide pladienolide. FEBS J 278(24):4870–4880. https://doi.org/10.1111/j.1742-4658.2011.08387.x
Zheng H, Chen S, Wang X, Xie J, Tian J, Wang F (2019) Intron retained bioluminescence reporter for real-time imaging of pre-mRNA splicing in living subjects. Anal Chem 91(19):12392–12398
Acknowledgments
This work was supported by Natural Science Basic Research Program of Shaanxi (Program No. 2022JC-56) and the National Natural Science Foundation of China (81772010).
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Wang, F., Chen, S., Zheng, H., Guo, B. (2022). Design of an Intron-Retained Bioluminescence Reporter and its Application in Imaging of Pre-mRNA Splicing in Living Subjects. In: Kim, SB. (eds) Bioluminescence. Methods in Molecular Biology, vol 2524. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2453-1_16
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DOI: https://doi.org/10.1007/978-1-0716-2453-1_16
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