Skip to main content

A Brief Introduction to Influenza A Virus in Swine

  • Protocol
  • First Online:
Book cover Animal Influenza Virus

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2123))

Abstract

Influenza A viruses (IAVs) of the Orthomyxoviridae virus family cause one of the most important respiratory diseases in pigs and humans. Repeated outbreaks and rapid spread of genetically and antigenically distinct IAVs represent a considerable challenge for animal production and public health. Bidirection transmission of IAV between pigs and people has altered the evolutionary dynamics of IAV, and a “One Health” approach is required to ameliorate morbidity and mortality in both hosts and improve control strategies. Although only subtypes of H1N1, H1N2, and H3N2 are endemic in swine around the world, considerable diversity can be found not only in the hemagglutinin (HA) and neuraminidase (NA) genes but in the remaining six genes as well. Human and swine IAVs have demonstrated a particular propensity for interspecies transmission, leading to regular and sometimes sustained incursions from man to pig and vice versa. The diversity of IAVs in swine remains a critical challenge in the diagnosis and control of this important pathogen for swine health and in turn contributes to a significant public health risk.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 99.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 129.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Kasowski EJ, Garten RJ, Bridges CB (2011) Influenza pandemic epidemiologic and virologic diversity: reminding ourselves of the possibilities. Clin Infect Dis 52(Suppl 1):S44–S49. https://doi.org/10.1093/cid/ciq010

    Article  PubMed  Google Scholar 

  2. Imai M, Kawaoka Y (2012) The role of receptor binding specificity in interspecies transmission of influenza viruses. Curr Opin Virol 2(2):160–167. https://doi.org/10.1016/j.coviro.2012.03.003

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Nelson MI, Gramer MR, Vincent AL, Holmes EC (2012) Global transmission of influenza viruses from humans to swine. J Gen Virol 93(Pt 10):2195–2203. https://doi.org/10.1099/vir.0.044974-0

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Ma W, Lager KM, Vincent AL, Janke BH, Gramer MR, Richt JA (2009) The role of swine in the generation of novel influenza viruses. Zoonoses Public Health 56(6–7):326–337. https://doi.org/10.1111/j.1863-2378.2008.01217.x

    Article  CAS  PubMed  Google Scholar 

  5. Lewis NS, Russell CA, Langat P, Anderson TK, Berger K, Bielejec F, Burke DF, Dudas G, Fonville JM, Fouchier RA, Kellam P, Koel BF, Lemey P, Nguyen T, Nuansrichy B, Peiris JM, Saito T, Simon G, Skepner E, Takemae N, Consortium E, Webby RJ, Van Reeth K, Brookes SM, Larsen L, Watson SJ, Brown IH, Vincent AL (2016) The global antigenic diversity of swine influenza A viruses. elife 5:e01914. https://doi.org/10.7554/eLife.12217

    Article  Google Scholar 

  6. Rajão DS, Anderson TK, Kitikoon P, Stratton J, Lewis NS, Vincent AL (2018) Antigenic and genetic evolution of contemporary swine H1 influenza viruses in the United States. Virology 518:45–54. https://doi.org/10.1016/j.virol.2018.02.006

    Article  CAS  PubMed  Google Scholar 

  7. Mena I, Nelson MI, Quezada-Monroy F, Dutta J, Cortes-Fernandez R, Lara-Puente JH, Castro-Peralta F, Cunha LF, Trovao NS, Lozano-Dubernard B, Rambaut A, van Bakel H, Garcia-Sastre A (2016) Origins of the 2009 H1N1 influenza pandemic in swine in Mexico. elife 5:e16777. https://doi.org/10.7554/eLife.16777

    Article  PubMed  PubMed Central  Google Scholar 

  8. Krog JS, Hjulsager CK, Larsen MA, Larsen LE (2017) Triple-reassortant influenza A virus with H3 of human seasonal origin, NA of swine origin, and internal A(H1N1) pandemic 2009 genes is established in Danish pigs. Influenza Other Respir Viruses 11(3):298–303. https://doi.org/10.1111/irv.12451

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Rajao DS, Gauger PC, Anderson TK, Lewis NS, Abente EJ, Killian ML, Perez DR, Sutton TC, Zhang J, Vincent AL (2015) Novel reassortant human-like H3N2 and H3N1 Influenza A viruses detected in pigs are virulent and antigenically distinct from swine viruses endemic to the United States. J Virol 89(22):11213–11222. https://doi.org/10.1128/JVI.01675-15

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Ngo LT, Hiromoto Y, Pham VP, Le HT, Nguyen HT, Le VT, Takemae N, Saito T (2012) Isolation of novel triple-reassortant swine H3N2 influenza viruses possessing the hemagglutinin and neuraminidase genes of a seasonal influenza virus in Vietnam in 2010. Influenza Other Respir Viruses 6(1):6–10. https://doi.org/10.1111/j.1750-2659.2011.00267.x

    Article  CAS  PubMed  Google Scholar 

  11. Zeller MA, Li G, Harmon KM, Zhang J, Vincent AL, Anderson TK, Gauger PC (2018) Complete genome sequences of two novel human-like H3N2 influenza A viruses, A/swine/Oklahoma/65980/2017 (H3N2) and A/swine/Oklahoma/65260/2017 (H3N2), detected in swine in the United States. Microbiol Resour Announce 7(20):41–42. https://doi.org/10.1128/MRA.01203-18

    Article  Google Scholar 

  12. Epperson S, Jhung M, Richards S, Quinlisk P, Ball L, Moll M, Boulton R, Haddy L, Biggerstaff M, Brammer L, Trock S, Burns E, Gomez T, Wong KK, Katz J, Lindstrom S, Klimov A, Bresee JS, Jernigan DB, Cox N, Finelli L, Influenza AvVIT (2013) Human infections with influenza A(H3N2) variant virus in the United States, 2011–2012. Clin Infect Dis 57(Suppl 1):S4–S11. https://doi.org/10.1093/cid/cit272

    Article  CAS  PubMed  Google Scholar 

  13. Pulit-Penaloza JA, Jones J, Sun X, Jang Y, Thor S, Belser JA, Zanders N, Creager HM, Ridenour C, Wang L, Stark TJ, Garten R, Chen LM, Barnes J, Tumpey TM, Wentworth DE, Maines TR, Davis CT (2018) Antigenically diverse swine origin H1N1 variant influenza viruses exhibit differential ferret pathogenesis and transmission phenotypes. J Virol 92(11):JVI.00095-18. https://doi.org/10.1128/JVI.00095-18

    Article  Google Scholar 

  14. Duwell MM, Blythe D, Radebaugh MW, Kough EM, Bachaus B, Crum DA, Perkins KA Jr, Blanton L, Davis CT, Jang Y, Vincent A, Chang J, Abney DE, Gudmundson L, Brewster MG, Polsky L, Rose DC, Feldman KA (2018) Influenza A(H3N2) variant virus outbreak at three fairs—Maryland, 2017. MMWR Morb Mortal Wkly Rep 67(42):1169–1173. https://doi.org/10.15585/mmwr.mm6742a1

    Article  PubMed  PubMed Central  Google Scholar 

  15. Greenbaum A, Quinn C, Bailer J, Su S, Havers F, Durand LO, Jiang V, Page S, Budd J, Shaw M, Biggerstaff M, de Fijter S, Smith K, Reed C, Epperson S, Brammer L, Feltz D, Sohner K, Ford J, Jain S, Gargiullo P, Weiss E, Burg P, DiOrio M, Fowler B, Finelli L, Jhung MA (2015) Investigation of an outbreak of variant influenza A (H3N2) virus infection associated with an agricultural fair-Ohio, August 2012. J Infect Dis 212(10):1592–1599. https://doi.org/10.1093/infdis/jiv269

    Article  PubMed  Google Scholar 

  16. Choi MJ, Morin CA, Scheftel J, Vetter SM, Smith K, Lynfield R, Variant Influenza Investigation T (2015) Variant influenza associated with live animal markets, minnesota. Zoonoses Public Health 62(5):326–330. https://doi.org/10.1111/zph.12139

    Article  CAS  PubMed  Google Scholar 

  17. Jhung MA, Epperson S, Biggerstaff M, Allen D, Balish A, Barnes N, Beaudoin A, Berman L, Bidol S, Blanton L, Blythe D, Brammer L, D'Mello T, Danila R, Davis W, de Fijter S, Diorio M, Durand LO, Emery S, Fowler B, Garten R, Grant Y, Greenbaum A, Gubareva L, Havers F, Haupt T, House J, Ibrahim S, Jiang V, Jain S, Jernigan D, Kazmierczak J, Klimov A, Lindstrom S, Longenberger A, Lucas P, Lynfield R, McMorrow M, Moll M, Morin C, Ostroff S, Page SL, Park SY, Peters S, Quinn C, Reed C, Richards S, Scheftel J, Simwale O, Shu B, Soyemi K, Stauffer J, Steffens C, Su S, Torso L, Uyeki TM, Vetter S, Villanueva J, Wong KK, Shaw M, Bresee JS, Cox N, Finelli L (2013) Outbreak of variant influenza A(H3N2) virus in the United States. Clin Infect Dis 57(12):1703–1712. https://doi.org/10.1093/cid/cit649

    Article  CAS  PubMed  Google Scholar 

  18. Xie JF, Zhang YH, Zhao L, Xiu WQ, Chen HB, Lin Q, Weng YW, Zheng KC (2018) Emergence of eurasian avian-like swine influenza A (H1N1) virus from an adult case in Fujian Province, China. Virol Sin 33(3):282–286. https://doi.org/10.1007/s12250-018-0034-1

    Article  PubMed  PubMed Central  Google Scholar 

  19. Resende PC, Born PS, Matos AR, Motta FC, Caetano BC, Debur MD, Riediger IN, Brown D, Siqueira MM (2017) Whole-genome characterization of a novel human influenza A (H1N2) virus variant, Brazil. Emerg Infect Dis 23(1):152–154. https://doi.org/10.3201/eid2301.161122

    Article  PubMed  PubMed Central  Google Scholar 

  20. Karesh WB, Dobson A, Lloyd-Smith JO, Lubroth J, Dixon MA, Bennett M, Aldrich S, Harrington T, Formenty P, Loh EH, Machalaba CC, Thomas MJ, Heymann DL (2012) Ecology of zoonoses: natural and unnatural histories. Lancet 380(9857):1936–1945. https://doi.org/10.1016/S0140-6736(12)61678-X

    Article  PubMed  PubMed Central  Google Scholar 

  21. Koen JS (1919) A practical method for field diagnosis of swine diseases. Am J Veter Med 14:468–470

    Google Scholar 

  22. Shope RE (1931) Swine influenza: iii. Filtration experiments and etiology. J Exp Med 54(3):373–385

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. Easterday BC, van Reeth K (1999) Swine influenza. In: Straw BE, D'Allaire S, Mengeling WL, Taylor DJ (eds) Diseases of swine, 8th edn. Iowa State University Press, Ames, pp 277–290

    Google Scholar 

  24. Zhou NN, Senne DA, Landgraf JS, Swenson SL, Erickson G, Rossow K, Liu L, Yoon K, Krauss S, Webster RG (1999) Genetic reassortment of avian, swine, and human influenza A viruses in American pigs. J Virol 73(10):8851–8856

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  25. Walia RR, Anderson TK, Vincent AL (2019) Regional patterns of genetic diversity in swine influenza A viruses in the United States from 2010 to 2016. Influenza Other Respir Viruses 13(3):262–273. https://doi.org/10.1111/irv.12559

    Article  PubMed  PubMed Central  Google Scholar 

  26. Karasin AI, Landgraf J, Swenson S, Erickson G, Goyal S, Woodruff M, Scherba G, Anderson G, Olsen CW (2002) Genetic characterization of H1N2 influenza A viruses isolated from pigs throughout the United States. J Clin Microbiol 40(3):1073–1079

    Article  PubMed  PubMed Central  Google Scholar 

  27. Karasin AI, Schutten MM, Cooper LA, Smith CB, Subbarao K, Anderson GA, Carman S, Olsen CW (2000) Genetic characterization of H3N2 influenza viruses isolated from pigs in North America, 1977–1999: evidence for wholly human and reassortant virus genotypes. Virus Res 68(1):71–85

    Article  CAS  PubMed  Google Scholar 

  28. Vincent AL, Ma W, Lager KM, Janke BH, Richt JA (2008) Swine influenza viruses a North American perspective. Adv Virus Res 72:127–154. https://doi.org/10.1016/S0065-3527(08)00403-X

    Article  CAS  PubMed  Google Scholar 

  29. Lorusso A, Vincent AL, Harland ML, Alt D, Bayles DO, Swenson SL, Gramer MR, Russell CA, Smith DJ, Lager KM, Lewis NS (2011) Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008. J Gen Virol 92(Pt 4):919–930. https://doi.org/10.1099/vir.0.027557-0

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  30. Lewis NS, Anderson TK, Kitikoon P, Skepner E, Burke DF, Vincent AL (2014) Substitutions near the hemagglutinin receptor-binding site determine the antigenic evolution of influenza A H3N2 viruses in U.S. swine. J Virol 88(9):4752–4763. https://doi.org/10.1128/JVI.03805-13

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  31. Abente EJ, Santos J, Lewis NS, Gauger PC, Stratton J, Skepner E, Anderson TK, Rajao DS, Perez DR, Vincent AL (2016) The molecular determinants of antibody recognition and antigenic drift in the H3 hemagglutinin of swine influenza A virus. J Virol 90(18):8266–8280. https://doi.org/10.1128/JVI.01002-16

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  32. de Jong JC, van Nieuwstadt AP, Kimman TG, Loeffen WL, Bestebroer TM, Bijlsma K, Verweij C, Osterhaus AD, Class EC (1999) Antigenic drift in swine influenza H3 haemagglutinins with implications for vaccination policy. Vaccine 17(11-12):1321–1328

    Article  PubMed  Google Scholar 

  33. Vincent AL, Ma W, Lager KM, Gramer MR, Richt JA, Janke BH (2009) Characterization of a newly emerged genetic cluster of H1N1 and H1N2 swine influenza virus in the United States. Virus Genes 39(2):176–185. https://doi.org/10.1007/s11262-009-0386-6

    Article  CAS  PubMed  Google Scholar 

  34. Nelson MI, Lemey P, Tan Y, Vincent A, Lam TT, Detmer S, Viboud C, Suchard MA, Rambaut A, Holmes EC, Gramer M (2011) Spatial dynamics of human-origin H1 influenza A virus in North American swine. PLoS Pathog 7(6):e1002077. https://doi.org/10.1371/journal.ppat.1002077

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  35. Anderson TK, Campbell BA, Nelson MI, Lewis NS, Janas-Martindale A, Killian ML, Vincent AL (2015) Characterization of co-circulating swine influenza A viruses in North America and the identification of a novel H1 genetic clade with antigenic significance. Virus Res 201:24–31. https://doi.org/10.1016/j.virusres.2015.02.009

    Article  CAS  PubMed  Google Scholar 

  36. Anderson TK, Macken CA, Lewis NS, Scheuermann RH, Van Reeth K, Brown IH, Swenson SL, Simon G, Saito T, Berhane Y, Ciacci-Zanella J, Pereda A, Davis CT, Donis RO, Webby RJ, Vincent AL (2016) A phylogeny-based global nomenclature system and automated annotation tool for H1 hemagglutinin genes from swine influenza A viruses. mSphere 1(6):e00275-16. https://doi.org/10.1128/mSphere.00275-16

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  37. Zeller MA, Anderson TK, Walia RW, Vincent AL, Gauger PC (2018) ISU FLUture: a veterinary diagnostic laboratory web-based platform to monitor the temporal genetic patterns of Influenza A virus in swine. BMC Bioinformat 19(1):397. https://doi.org/10.1186/s12859-018-2408-7

    Article  Google Scholar 

  38. Nelson M, Culhane MR, Rovira A, Torremorell M, Guerrero P, Norambuena J (2015) Novel human-like Influenza A viruses circulate in swine in Mexico and Chile. PLoS Curr 7. https://doi.org/10.1371/currents.outbreaks.c8b3207c9bad98474eca3013fa933ca6

  39. Cappuccio JA, Pena L, Dibarbora M, Rimondi A, Pineyro P, Insarralde L, Quiroga MA, Machuca M, Craig MI, Olivera V, Chockalingam A, Perfumo CJ, Perez DR, Pereda A (2011) Outbreak of swine influenza in Argentina reveals a non-contemporary human H3N2 virus highly transmissible among pigs. J Gen Virol 92(Pt 12):2871–2878. https://doi.org/10.1099/vir.0.036590-0

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  40. Pereda A, Rimondi A, Cappuccio J, Sanguinetti R, Angel M, Ye J, Sutton T, Dibarbora M, Olivera V, Craig MI, Quiroga M, Machuca M, Ferrero A, Perfumo C, Perez DR (2011) Evidence of reassortment of pandemic H1N1 influenza virus in swine in Argentina: are we facing the expansion of potential epicenters of influenza emergence? Influenza Other Respir Viruses 5(6):409–412. https://doi.org/10.1111/j.1750-2659.2011.00246.x

    Article  PubMed  PubMed Central  Google Scholar 

  41. Dibarbora M, Cappuccio J, Olivera V, Quiroga M, Machuca M, Perfumo C, Perez D, Pereda A (2013) Swine influenza: clinical, serological, pathological, and virological cross-sectional studies in nine farms in Argentina. Influenza Other Respir Viruses 7(Suppl 4):10–15. https://doi.org/10.1111/irv.12200

    Article  PubMed  PubMed Central  Google Scholar 

  42. Biondo N, Schaefer R, Gava D, Cantao ME, Silveira S, Mores MA, Ciacci-Zanella JR, Barcellos DE (2014) Genomic analysis of influenza A virus from captive wild boars in Brazil reveals a human-like H1N2 influenza virus. Vet Microbiol 168(1):34–40. https://doi.org/10.1016/j.vetmic.2013.10.010

    Article  CAS  PubMed  Google Scholar 

  43. Nelson MI, Schaefer R, Gava D, Cantao ME, Ciacci-Zanella JR (2015) Influenza A Viruses of Human Origin in Swine, Brazil. Emerg Infect Dis 21(8):1339–1347. https://doi.org/10.3201/eid2108.141891

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  44. Vincent A, Awada L, Brown I, Chen H, Claes F, Dauphin G, Donis R, Culhane M, Hamilton K, Lewis N, Mumford E, Nguyen T, Parchariyanon S, Pasick J, Pavade G, Pereda A, Peiris M, Saito T, Swenson S, Van Reeth K, Webby R, Wong F, Ciacci-Zanella J (2014) Review of influenza A virus in swine worldwide: a call for increased surveillance and research. Zoonoses Public Health 61(1):4–17. https://doi.org/10.1111/zph.12049

    Article  CAS  PubMed  Google Scholar 

  45. Van Reeth K, Brown IH, Olsen CW (2012) Swine influenza. In: Zimmerman JJ (ed) Diseases of swine, 10th edn. Wiley-Blackwell, Chichester, West Sussex

    Google Scholar 

  46. Castrucci MR, Donatelli I, Sidoli L, Barigazzi G, Kawaoka Y, Webster RG (1993) Genetic reassortment between avian and human influenza A viruses in Italian pigs. Virology 193(1):503–506. https://doi.org/10.1006/viro.1993.1155

    Article  CAS  PubMed  Google Scholar 

  47. Kyriakis CS, Brown IH, Foni E, Kuntz-Simon G, Maldonado J, Madec F, Essen SC, Chiapponi C, Van Reeth K (2011) Virological surveillance and preliminary antigenic characterization of influenza viruses in pigs in five European countries from 2006 to 2008. Zoonoses Public Health 58(2):93–101. https://doi.org/10.1111/j.1863-2378.2009.01301.x

    Article  CAS  PubMed  Google Scholar 

  48. Chiapponi C, Ebranati E, Pariani E, Faccini S, Luppi A, Baioni L, Manfredi R, Carta V, Merenda M, Affanni P, Colucci ME, Veronesi L, Zehender G, Foni E (2018) Genetic analysis of human and swine influenza A viruses isolated in Northern Italy during 2010-2015. Zoonoses Public Health 65(1):114–123. https://doi.org/10.1111/zph.12378

    Article  CAS  PubMed  Google Scholar 

  49. Watson SJ, Langat P, Reid SM, Lam TT, Cotten M, Kelly M, Van Reeth K, Qiu Y, Simon G, Bonin E, Foni E, Chiapponi C, Larsen L, Hjulsager C, Markowska-Daniel I, Urbaniak K, Durrwald R, Schlegel M, Huovilainen A, Davidson I, Dan A, Loeffen W, Edwards S, Bublot M, Vila T, Maldonado J, Valls L, Consortium E, Brown IH, Pybus OG, Kellam P (2015) Molecular Epidemiology and Evolution of Influenza Viruses Circulating within European Swine between 2009 and 2013. J Virol 89(19):9920–9931. https://doi.org/10.1128/JVI.00840-15

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  50. Choi YK, Pascua PN, Song MS (2013) Swine influenza viruses: an Asian perspective. Curr Top Microbiol Immunol 370:147–172. https://doi.org/10.1007/82_2011_195

    Article  PubMed  Google Scholar 

  51. Zhu H, Webby R, Lam TT, Smith DK, Peiris JS, Guan Y (2013) History of swine influenza viruses in Asia. Curr Top Microbiol Immunol 370:57–68. https://doi.org/10.1007/82_2011_179

    Article  PubMed  Google Scholar 

  52. Vijaykrishna D, Smith GJ, Pybus OG, Zhu H, Bhatt S, Poon LL, Riley S, Bahl J, Ma SK, Cheung CL, Perera RA, Chen H, Shortridge KF, Webby RJ, Webster RG, Guan Y, Peiris JS (2011) Long-term evolution and transmission dynamics of swine influenza A virus. Nature 473(7348):519–522. https://doi.org/10.1038/nature10004

    Article  CAS  PubMed  Google Scholar 

  53. Nelson MI, Viboud C, Vincent AL, Culhane MR, Detmer SE, Wentworth DE, Rambaut A, Suchard MA, Holmes EC, Lemey P (2015) Global migration of influenza A viruses in swine. Nat Commun 6:6696. https://doi.org/10.1038/ncomms7696

    Article  CAS  PubMed  Google Scholar 

  54. Vijaykrishna D, Poon LLM, Zhu HC, Ma SK, Li OTW, Cheung CL, Smith GJD, Peiris JSM, Guan Y (2010) Reassortment of Pandemic H1N1/2009 Influenza A Virus in Swine. Science 328(5985):1529–1529. https://doi.org/10.1126/science.1189132

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  55. Liang H, Lam TT, Fan X, Chen X, Zeng Y, Zhou J, Duan L, Tse M, Chan CH, Li L, Leung TY, Yip CH, Cheung CL, Zhou B, Smith DK, Poon LL, Peiris M, Guan Y, Zhu H (2014) Expansion of genotypic diversity and establishment of 2009 H1N1 pandemic-origin internal genes in pigs in China. J Virol 88(18):10864–10874. https://doi.org/10.1128/JVI.01327-14

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  56. Matsuu A, Uchida Y, Takemae N, Mawatari T, Yoneyama SK, Kasai T, Nakamura R, Eto M, Saito T (2012) Genetic characterization of swine influenza viruses isolated in Japan between 2009 and 2012. Microbiol Immunol 56(11):792–803. https://doi.org/10.1111/j.1348-0421.2012.00501.x

    Article  CAS  PubMed  Google Scholar 

  57. Kitikoon P, Sreta D, Na Ayudhya SN, Wongphatcharachai M, Lapkuntod J, Prakairungnamthip D, Bunpapong N, Suradhat S, Thanawongnuwech R, Amonsin A (2011) Brief report: Molecular characterization of a novel reassorted pandemic H1N1 2009 in Thai pigs. Virus Genes 43(1):1–5. https://doi.org/10.1007/s11262-011-0597-5

    Article  CAS  PubMed  Google Scholar 

  58. Mine J, Abe H, Parchariyanon S, Boonpornprasert P, Ubonyaem N, Nuansrichay B, Takemae N, Tanikawa T, Tsunekuni R, Uchida Y, Saito T (2018) Genetic and antigenic dynamics of influenza A viruses of swine on pig farms in Thailand. Arch Virol 164(2):457–472. https://doi.org/10.1007/s00705-018-4091-4

    Article  CAS  PubMed  Google Scholar 

  59. Baudon E, Chu DKW, Tung DD, Thi Nga P, Vu Mai Phuong H, Le Khanh Hang N, Thanh LT, Thuy NT, Khanh NC, Mai LQ, Khong NV, Cowling BJ, Peyre M, Peiris M (2018) Swine influenza viruses in Northern Vietnam in 2013-2014. Emerg Microbes Infect 7(1):123. https://doi.org/10.1038/s41426-018-0109-y

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  60. He P, Wang G, Mo Y, Yu Q, Xiao X, Yang W, Zhao W, Guo X, Chen Q, He J, Liang M, Zhu J, Ding Y, Wei Z, Ouyang K, Liu F, Jian H, Huang W, Garcia-Sastre A, Chen Y (2018) Novel triple-reassortant influenza viruses in pigs, Guangxi, China. Emerg Microbes Infect 7(1):85. https://doi.org/10.1038/s41426-018-0088-z

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  61. Takemae N, Parchariyanon S, Damrongwatanapokin S, Uchida Y, Ruttanapumma R, Watanabe C, Yamaguchi S, Saito T (2008) Genetic diversity of swine influenza viruses isolated from pigs during 2000 to 2005 in Thailand. Influenza Other Respir Viruses 2(5):181–189. https://doi.org/10.1111/j.1750-2659.2008.00062.x

    Article  PubMed  PubMed Central  Google Scholar 

  62. Wong FYK, Donato C, Deng Y-M, Teng D, Komadina N, Baas C, Modak J, O’Dea M, Smith DW, Effler PV, Cooke J, Davies KR, Hurt A, Kung N, Levy A, Loh R, Shan S, Shinwari MW, Stevens V, Taylor J, Williams DT, Watson J, Eagles D, McCullough S, Barr IG, Dhanasekaran V (2018) Divergent human origin influenza viruses detected in Australian swine populations. J Virol 92(16):e00316-18. https://doi.org/10.1128/JVI.00316-18

    Article  PubMed  PubMed Central  Google Scholar 

  63. Nelson MI, Vincent AL (2015) Reverse zoonosis of influenza to swine: new perspectives on the human–animal interface. Trends Microbiol 23(3):142–153. https://doi.org/10.1016/j.tim.2014.12.002

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  64. Nelson MI, Stratton J, Killian ML, Janas-Martindale A, Vincent AL (2015) Continual reintroduction of human pandemic H1N1 influenza A viruses into swine in the United States, 2009 to 2014. J Virol 89(12):6218–6226. https://doi.org/10.1128/JVI.00459-15

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  65. Kitikoon P, Nelson MI, Killian ML, Anderson TK, Koster L, Culhane MR, Vincent AL (2013) Genotype patterns of contemporary reassorted H3N2 virus in US swine. J Gen Virol 94(Pt 6):1236–1241. https://doi.org/10.1099/vir.0.51839-0

    Article  CAS  PubMed  Google Scholar 

  66. Nelson MI, Detmer SE, Wentworth DE, Tan Y, Schwartzbard A, Halpin RA, Stockwell TB, Lin X, Vincent AL, Gramer MR, Holmes EC (2012) Genomic reassortment of influenza A virus in North American swine, 1998–2011. J Gen Virol 93(Pt 12):2584–2589. https://doi.org/10.1099/vir.0.045930-0

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  67. Anderson TK, Nelson MI, Kitikoon P, Swenson SL, Korslund JA, Vincent AL (2013) Population dynamics of cocirculating swine influenza A viruses in the United States from 2009 to 2012. Influenza Other Respir Viruses 7(Suppl 4):42–51. https://doi.org/10.1111/irv.12193

    Article  PubMed  PubMed Central  Google Scholar 

  68. Simon G, Larsen LE, Dürrwald R, Foni E, Harder T, Van Reeth K, Markowska-Daniel I, Reid SM, Dán Á, Maldonado J, Huovilainen A, Billinis C, Davidson I, Agüero M, Vila T, Hervé S, Breum SØ, Chiapponi C, Urbaniak K, Kyriakis CS, Consortium E, Brown IH, Loeffen W (2014) European surveillance network for influenza in pigs: surveillance programs, diagnostic tools and Swine influenza virus subtypes identified in 14 European countries from 2010 to 2013. PLoS One 9(12):e115815. https://doi.org/10.1371/journal.pone.0115815

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  69. Webster RG (2002) The importance of animal influenza for human disease. Vaccine 20(Suppl 2):S16–S20

    Article  PubMed  Google Scholar 

  70. Dacso CC, Couch RB, Six HR, Young JF, Quarles JM, Kasel JA (1984) Sporadic occurrence of zoonotic swine influenza virus infections. J Clin Microbiol 20(4):833–835

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  71. Shinde V, Bridges CB, Uyeki TM, Shu B, Balish A, Xu X, Lindstrom S, Gubareva LV, Deyde V, Garten RJ, Harris M, Gerber S, Vagasky S, Smith F, Pascoe N, Martin K, Dufficy D, Ritger K, Conover C, Quinlisk P, Klimov A, Bresee JS, Finelli L (2009) Triple-reassortant swine influenza A (H1) in humans in the United States, 2005–2009. New Engl J Med 360(25):2616–2625. https://doi.org/10.1056/NEJMoa0903812

    Article  CAS  PubMed  Google Scholar 

  72. Shu B, Garten R, Emery S, Balish A, Cooper L, Sessions W, Deyde V, Smith C, Berman L, Klimov A, Lindstrom S, Xu X (2012) Genetic analysis and antigenic characterization of swine origin influenza viruses isolated from humans in the United States, 1990-2010. Virology 422(1):151–160. https://doi.org/10.1016/j.virol.2011.10.016

    Article  CAS  PubMed  Google Scholar 

  73. Myers KP, Olsen CW, Gray GC (2007) Cases of swine influenza in humans: a review of the literature. Clin Infect Dis 44(8):1084–1088. https://doi.org/10.1086/512813

    Article  PubMed  Google Scholar 

  74. Van Reeth K (2007) Avian and swine influenza viruses: our current understanding of the zoonotic risk. Vet Res 38(2):243–260. https://doi.org/10.1051/vetres:2006062

    Article  CAS  PubMed  Google Scholar 

  75. Berhane Y, Kehler H, Handel K, Hisanaga T, Xu W, Ojkic D, Pasick J (2012) Molecular and antigenic characterization of reassortant H3N2 viruses from turkeys with a unique constellation of pandemic H1N1 internal genes. PLoS One 7(3):e32858. https://doi.org/10.1371/journal.pone.0032858

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  76. Nfon C, Berhane Y, Zhang S, Handel K, Labrecque O, Pasick J (2011) Molecular and antigenic characterization of triple-reassortant H3N2 swine influenza viruses isolated from pigs, turkey and quail in Canada. Transbound Emerg Dis 58(5):394–401. https://doi.org/10.1111/j.1865-1682.2011.01219.x

    Article  CAS  PubMed  Google Scholar 

  77. Pillai SP, Pantin-Jackwood M, Jadhao SJ, Suarez DL, Wang L, Yassine HM, Saif YM, Lee CW (2009) Pathobiology of triple reassortant H3N2 influenza viruses in breeder turkeys and its potential implication for vaccine studies in turkeys. Vaccine 27(6):819–824. https://doi.org/10.1016/j.vaccine.2008.11.076

    Article  CAS  PubMed  Google Scholar 

  78. Pillai SP, Pantin-Jackwood M, Yassine HM, Saif YM, Lee CW (2010) The high susceptibility of turkeys to influenza viruses of different origins implies their importance as potential intermediate hosts. Avian Dis 54(1 Suppl):522–526. https://doi.org/10.1637/8770-033109-Review.1

    Article  CAS  PubMed  Google Scholar 

  79. Yassine HM, Khatri M, Lee CW, Saif YM (2010) Characterization of an H3N2 triple reassortant influenza virus with a mutation at the receptor binding domain (D190A) that occurred upon virus transmission from turkeys to pigs. Virol J 7:258. https://doi.org/10.1186/1743-422X-7-258

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  80. CDC (2018) Human infections with novel influenza A viruses. https://www.cdc.gov/flu/weekly/fluviewinteractive.htm. Accessed 17 Dec 2018

  81. Bowman AS, Walia RR, Nolting JM, Vincent AL, Killian ML, Zentkovich MM, Lorbach JN, Lauterbach SE, Anderson TK, Davis CT, Zanders N, Jones J, Jang Y, Lynch B, Rodriguez MR, Blanton L, Lindstrom SE, Wentworth DE, Schiltz J, Averill JJ, Forshey T (2017) Influenza A(H3N2) Virus in Swine at Agricultural Fairs and Transmission to Humans, Michigan and Ohio, USA, 2016. Emerg Infect Dis 23(9):1551–1555. https://doi.org/10.3201/eid2309.170847

    Article  PubMed  PubMed Central  Google Scholar 

  82. Pearce MB, Jayaraman A, Pappas C, Belser JA, Zeng H, Gustin KM, Maines TR, Sun X, Raman R, Cox NJ, Sasisekharan R, Katz JM, Tumpey TM (2012) Pathogenesis and transmission of swine origin A(H3N2)v influenza viruses in ferrets. Proc Natl Acad Sci U S A 109(10):3944–3949. https://doi.org/10.1073/pnas.1119945109

    Article  PubMed  PubMed Central  Google Scholar 

  83. Sun X, Pulit-Penaloza JA, Belser JA, Pappas C, Pearce MB, Brock N, Zeng H, Creager HM, Zanders N, Jang Y, Tumpey TM, Davis CT, Maines TR (2018) Pathogenesis and transmission of genetically diverse swine-origin H3N2 variant influenza A viruses from multiple lineages isolated in the United States, 2011–2016. J Virol 92(16):e00665-18. https://doi.org/10.1128/JVI.00665-18

    Article  PubMed  PubMed Central  Google Scholar 

  84. Pulit-Penaloza JA, Pappas C, Belser JA, Sun X, Brock N, Zeng H, Tumpey TM, Maines TR (2018) Comparative in vitro and in vivo analysis of H1N1 and H1N2 variant influenza viruses isolated from humans between 2011 and 2016. J Virol 92(22):e01444-18. https://doi.org/10.1128/JVI.01444-18

    Article  PubMed  PubMed Central  Google Scholar 

  85. Zhu H, Zhou B, Fan X, Lam TT, Wang J, Chen A, Chen X, Chen H, Webster RG, Webby R, Peiris JS, Smith DK, Guan Y (2011) Novel reassortment of Eurasian avian-like and pandemic/2009 influenza viruses in swine: infectious potential for humans. J Virol 85(20):10432–10439. https://doi.org/10.1128/JVI.05352-11

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  86. Pascua PN, Song MS, Kwon HI, Lim GJ, Kim EH, Park SJ, Lee OJ, Kim CJ, Webby RJ, Webster RG, Choi YK (2013) The homologous tripartite viral RNA polymerase of A/swine/Korea/CT1204/2009(H1N2) influenza virus synergistically drives efficient replication and promotes respiratory droplet transmission in ferrets. J Virol 87(19):10552–10562. https://doi.org/10.1128/JVI.01333-13

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  87. Pascua PN, Song MS, Lee JH, Baek YH, Kwon HI, Park SJ, Choi EH, Lim GJ, Lee OJ, Kim SW, Kim CJ, Sung MH, Kim MH, Yoon SW, Govorkova EA, Webby RJ, Webster RG, Choi YK (2012) Virulence and transmissibility of H1N2 influenza virus in ferrets imply the continuing threat of triple-reassortant swine viruses. Proc Natl Acad Sci U S A 109(39):15900–15905. https://doi.org/10.1073/pnas.1205576109

    Article  PubMed  PubMed Central  Google Scholar 

  88. Yen HL, Forrest H, Cheung P, Wong D, Li O, Krauss S, Ferguson A, Crumpton JC, Jones J, Choy T, Ma E, Poon LL, Smith GJ, Nicholls J, Guan Y, Webster RG, Webby R, Peiris JS (2011) Transmissibility of pandemic H1N1 and genetically related swine influenza viruses in ferrets. Influenza Other Respir Viruses 5(Suppl 1):85–87

    PubMed  Google Scholar 

  89. Centers for Disease C, Prevention (2012) Antibodies cross-reactive to influenza A (H3N2) variant virus and impact of 2010-11 seasonal influenza vaccine on cross-reactive antibodies - United States. MMWR Morb Mortal Wkly Rep 61(14):237–241

    Google Scholar 

  90. Skowronski DM, Janjua NZ, De Serres G, Purych D, Gilca V, Scheifele DW, Dionne M, Sabaiduc S, Gardy JL, Li G, Bastien N, Petric M, Boivin G, Li Y (2012) Cross-reactive and vaccine-induced antibody to an emerging swine-origin variant of influenza A virus subtype H3N2 (H3N2v). J Infect Dis 206(12):1852–1861. https://doi.org/10.1093/infdis/jis500

    Article  CAS  PubMed  Google Scholar 

  91. Houser KV, Katz JM, Tumpey TM (2013) Seasonal trivalent inactivated influenza vaccine does not protect against newly emerging variants of influenza A (H3N2v) virus in ferrets. J Virol 87(2):1261–1263. https://doi.org/10.1128/JVI.02625-12

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  92. Janke BH (2013) Clinicopathological features of Swine influenza. Curr Top Microbiol Immunol 370:69–83. https://doi.org/10.1007/82_2013_308

    Article  CAS  PubMed  Google Scholar 

  93. Thacker EL, Thacker BJ, Janke BH (2001) Interaction between Mycoplasma hyopneumoniae and swine influenza virus. J Clin Microbiol 39(7):2525–2530. https://doi.org/10.1128/JCM.39.7.2525-2530.2001

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  94. Allerson M, Deen J, Detmer SE, Gramer MR, Joo HS, Romagosa A, Torremorell M (2013) The impact of maternally derived immunity on influenza A virus transmission in neonatal pig populations. Vaccine 31(3):500–505. https://doi.org/10.1016/j.vaccine.2012.11.023

    Article  CAS  PubMed  Google Scholar 

  95. Corzo CA, Culhane M, Juleen K, Stigger-Rosser E, Ducatez MF, Webby RJ, Lowe JF (2013) Active surveillance for influenza A virus among swine, midwestern United States, 2009-2011. Emerg Infect Dis 19(6):954–960. https://doi.org/10.3201/eid1906.121637

    Article  PubMed  PubMed Central  Google Scholar 

  96. Corzo CA, Allerson M, Gramer M, Morrison RB, Torremorell M (2014) Detection of airborne influenza a virus in experimentally infected pigs with maternally derived antibodies. Transbound Emerg Dis 61(1):28–36. https://doi.org/10.1111/j.1865-1682.2012.01367.x

    Article  CAS  PubMed  Google Scholar 

  97. Torremorell M, Allerson M, Corzo C, Diaz A, Gramer M (2012) Transmission of influenza A virus in pigs. Transbound Emerg Dis 59(Suppl 1):68–84. https://doi.org/10.1111/j.1865-1682.2011.01300.x

    Article  PubMed  Google Scholar 

  98. Allerson MW, Davies PR, Gramer MR, Torremorell M (2014) Infection dynamics of pandemic 2009 H1N1 influenza virus in a two-site swine herd. Transbound Emerg Dis 61(6):490–499. https://doi.org/10.1111/tbed.12053

    Article  CAS  PubMed  Google Scholar 

  99. Beaudoin A, Johnson S, Davies P, Bender J, Gramer M (2012) Characterization of influenza a outbreaks in Minnesota swine herds and measures taken to reduce the risk of zoonotic transmission. Zoonoses Public Health 59(2):96–106. https://doi.org/10.1111/j.1863-2378.2011.01423.x

    Article  CAS  PubMed  Google Scholar 

  100. Van Reeth K, Ma W (2013) Swine influenza virus vaccines: to change or not to change-that's the question. Curr Top Microbiol Immunol 370:173–200. https://doi.org/10.1007/82_2012_266

    Article  CAS  PubMed  Google Scholar 

  101. Vincent AL, Perez DR, Rajao D, Anderson TK, Abente EJ, Walia RR, Lewis NS (2017) Influenza A virus vaccines for swine. Vet Microbiol 206:35–44. https://doi.org/10.1016/j.vetmic.2016.11.026

    Article  CAS  PubMed  Google Scholar 

  102. Vander Veen RL, Loynachan AT, Mogler MA, Russell BJ, Harris DL, Kamrud KI (2012) Safety, immunogenicity, and efficacy of an alphavirus replicon-based swine influenza virus hemagglutinin vaccine. Vaccine 30(11):1944–1950. https://doi.org/10.1016/j.vaccine.2012.01.030

    Article  CAS  PubMed  Google Scholar 

  103. Vander Veen RL, Mogler MA, Russell BJ, Loynachan AT, Harris DL, Kamrud KI (2013) Haemagglutinin and nucleoprotein replicon particle vaccination of swine protects against the pandemic H1N1 2009 virus. Vet Rec 173(14):344. https://doi.org/10.1136/vr.101741

    Article  CAS  PubMed  Google Scholar 

  104. Kitikoon P, Gauger PC, Anderson TK, Culhane MR, Swenson S, Loving CL, Perez DR, Vincent AL (2013) Swine influenza virus vaccine serologic cross-reactivity to contemporary US swine H3N2 and efficacy in pigs infected with an H3N2 similar to 2011-2012 H3N2v. Influenza Other Respir Viruses 7(Suppl 4):32–41. https://doi.org/10.1111/irv.12189

    Article  PubMed  PubMed Central  Google Scholar 

  105. Heinen PP, van Nieuwstadt AP, de Boer-Luijtze EA, Bianchi AT (2001) Analysis of the quality of protection induced by a porcine influenza A vaccine to challenge with an H3N2 virus. Vet Immunol Immunopathol 82(1-2):39–56

    Article  CAS  PubMed  Google Scholar 

  106. Kitikoon P, Nilubol D, Erickson BJ, Janke BH, Hoover TC, Sornsen SA, Thacker EL (2006) The immune response and maternal antibody interference to a heterologous H1N1 swine influenza virus infection following vaccination. Vet Immunol Immunopathol 112(3-4):117–128. https://doi.org/10.1016/j.vetimm.2006.02.008

    Article  CAS  PubMed  Google Scholar 

  107. Vincent AL, Lager KM, Janke BH, Gramer MR, Richt JA (2008) Failure of protection and enhanced pneumonia with a US H1N2 swine influenza virus in pigs vaccinated with an inactivated classical swine H1N1 vaccine. Vet Microbiol 126(4):310–323. https://doi.org/10.1016/j.vetmic.2007.07.011

    Article  CAS  PubMed  Google Scholar 

  108. Loving CL, Lager KM, Vincent AL, Brockmeier SL, Gauger PC, Anderson TK, Kitikoon P, Perez DR, Kehrli ME Jr (2013) Efficacy in pigs of inactivated and live attenuated influenza virus vaccines against infection and transmission of an emerging H3N2 similar to the 2011–2012 H3N2v. J Virol 87(17):9895–9903. https://doi.org/10.1128/JVI.01038-13

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  109. Platt R, Vincent AL, Gauger PC, Loving CL, Zanella EL, Lager KM, Kehrli ME Jr, Kimura K, Roth JA (2011) Comparison of humoral and cellular immune responses to inactivated swine influenza virus vaccine in weaned pigs. Vet Immunol Immunopathol 142(3-4):252–257. https://doi.org/10.1016/j.vetimm.2011.05.005

    Article  CAS  PubMed  Google Scholar 

  110. Wesley RD, Lager KM (2006) Overcoming maternal antibody interference by vaccination with human adenovirus 5 recombinant viruses expressing the hemagglutinin and the nucleoprotein of swine influenza virus. Vet Microbiol 118(1–2):67–75. https://doi.org/10.1016/j.vetmic.2006.07.014

    Article  CAS  PubMed  Google Scholar 

  111. Gauger PC, Vincent AL, Loving CL, Lager KM, Janke BH, Kehrli ME Jr, Roth JA (2011) Enhanced pneumonia and disease in pigs vaccinated with an inactivated human-like (delta-cluster) H1N2 vaccine and challenged with pandemic 2009 H1N1 influenza virus. Vaccine 29(15):2712–2719. https://doi.org/10.1016/j.vaccine.2011.01.082

    Article  CAS  PubMed  Google Scholar 

  112. Kitikoon P, Vincent AL, Janke BH, Erickson B, Strait EL, Yu S, Gramer MR, Thacker EL (2009) Swine influenza matrix 2 (M2) protein contributes to protection against infection with different H1 swine influenza virus (SIV) isolates. Vaccine 28(2):523–531. https://doi.org/10.1016/j.vaccine.2009.09.130

    Article  CAS  PubMed  Google Scholar 

  113. Vincent AL, Ma W, Lager KM, Richt JA, Janke BH, Sandbulte MR, Gauger PC, Loving CL, Webby RJ, Garcia-Sastre A (2012) Live attenuated influenza vaccine provides superior protection from heterologous infection in pigs with maternal antibodies without inducing vaccine-associated enhanced respiratory disease. J Virol 86(19):10597–10605. https://doi.org/10.1128/JVI.01439-12

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  114. Babiuk S, Masic A, Graham J, Neufeld J, van der Loop M, Copps J, Berhane Y, Pasick J, Potter A, Babiuk LA, Weingartl H, Zhou Y (2011) An elastase-dependent attenuated heterologous swine influenza virus protects against pandemic H1N1 2009 influenza challenge in swine. Vaccine 29(17):3118–3123. https://doi.org/10.1016/j.vaccine.2011.02.069

    Article  CAS  PubMed  Google Scholar 

  115. Masic A, Lu X, Li J, Mutwiri GK, Babiuk LA, Brown EG, Zhou Y (2010) Immunogenicity and protective efficacy of an elastase-dependent live attenuated swine influenza virus vaccine administered intranasally in pigs. Vaccine 28(43):7098–7108. https://doi.org/10.1016/j.vaccine.2010.08.003

    Article  CAS  PubMed  Google Scholar 

  116. Masic A, Pyo HM, Babiuk S, Zhou Y (2013) An eight-segment swine influenza virus harboring H1 and H3 hemagglutinins is attenuated and protective against H1N1 and H3N2 subtypes in pigs. J Virol 87(18):10114–10125. https://doi.org/10.1128/JVI.01348-13

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  117. Pena L, Vincent AL, Ye J, Ciacci-Zanella JR, Angel M, Lorusso A, Gauger PC, Janke BH, Loving CL, Perez DR (2011) Modifications in the polymerase genes of a swine-like triple-reassortant influenza virus to generate live attenuated vaccines against 2009 pandemic H1N1 viruses. J Virol 85(1):456–469. https://doi.org/10.1128/JVI.01503-10

    Article  CAS  PubMed  Google Scholar 

  118. Richt JA, Lekcharoensuk P, Lager KM, Vincent AL, Loiacono CM, Janke BH, Wu WH, Yoon KJ, Webby RJ, Solorzano A, Garcia-Sastre A (2006) Vaccination of pigs against swine influenza viruses by using an NS1-truncated modified live-virus vaccine. J Virol 80(22):11009–11018. https://doi.org/10.1128/JVI.00787-06

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  119. Gauger PC, Loving CL, Khurana S, Lorusso A, Perez DR, Kehrli ME Jr, Roth JA, Golding H, Vincent AL (2014) Live attenuated influenza A virus vaccine protects against A(H1N1)pdm09 heterologous challenge without vaccine associated enhanced respiratory disease. Virology 471-473:93–104. https://doi.org/10.1016/j.virol.2014.10.003

    Article  CAS  PubMed  Google Scholar 

  120. Kaplan BS, Souza CK, Gauger PC, Stauft CB, Robert Coleman J, Mueller S, Vincent AL (2018) Vaccination of pigs with a codon-pair bias de-optimized live attenuated influenza vaccine protects from homologous challenge. Vaccine 36(8):1101–1107. https://doi.org/10.1016/j.vaccine.2018.01.027

    Article  CAS  PubMed  Google Scholar 

  121. Zhou P, Hong M, Merrill MM, He H, Sun L, Zhang G (2014) Serological report of influenza A (H7N9) infections among pigs in Southern China. BMC Vet Res 10:203. https://doi.org/10.1186/s12917-014-0203-x

    Article  PubMed  PubMed Central  Google Scholar 

  122. Arunorat J, Charoenvisal N, Woonwong Y, Kedkovid R, Thanawongnuwech R (2016) Determination of current reference viruses for serological study of swine influenza viruses after the introduction of pandemic 2009 H1N1 (pdmH1N1) in Thailand. J Virol Methods 236:5–9. https://doi.org/10.1016/j.jviromet.2016.06.010

    Article  CAS  PubMed  Google Scholar 

  123. Delogu M, Cotti C, Vaccari G, Raffini E, Frasnelli M, Nicoloso S, Biacchessi V, Boni A, Foni E, Castrucci MR, De Marco MA (2018) Serologic and virologic evidence of influenza A viruses in wild boars (Sus scrofa) from two different locations in Italy. J Wildl Dis 55(1):158–163. https://doi.org/10.7589/2017-11-285

    Article  PubMed  Google Scholar 

  124. Ciacci-Zanella JR, Vincent AL, Prickett JR, Zimmerman SM, Zimmerman JJ (2010) Detection of anti-influenza A nucleoprotein antibodies in pigs using a commercial influenza epitope-blocking enzyme-linked immunosorbent assay developed for avian species. J Vet Diagn Investig 22(1):3–9. https://doi.org/10.1177/104063871002200102

    Article  Google Scholar 

  125. Kyriakis CS, Olsen CW, Carman S, Brown IH, Brookes SM, Doorsselaere JV, Reeth KV (2010) Serologic cross-reactivity with pandemic (H1N1) 2009 virus in pigs, Europe. Emerg Infect Dis 16(1):96–99. https://doi.org/10.3201/eid1601.091190

    Article  PubMed  PubMed Central  Google Scholar 

  126. OFFLU (2013) OFFLU strategic document for surveillance and monitoring of influenzas in animals. http://www.offlu.net/fileadmin/home/en/publications/pdf/OFFLUsurveillance.pdf. Accessed 24 Sept 2013

  127. Nelson SW, Hammons CT, Bliss NT, Lauterbach SE, Zentkovich MM, Lorbach JN, Nolting JM, Bowman AS (2018) Evaluation of nonwoven fabrics for nasal wipe sampling for influenza A virus in swine. J Vet Diagn Investig 30(6):920–923. https://doi.org/10.1177/1040638718803999

    Article  CAS  Google Scholar 

  128. Edwards JL, Nelson SW, Workman JD, Slemons RD, Szablewski CM, Nolting JM, Bowman AS (2014) Utility of snout wipe samples for influenza A virus surveillance in exhibition swine populations. Influenza Other Respir Viruses 8(5):574–579. https://doi.org/10.1111/irv.12270

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  129. Rambo-Martin BL, Keller MW, Wilson MM, Nolting JM, Anderson TK, Vincent AL, Bagal U, Jang Y, Neuhaus EB, Davis CT, Bowman AS, Wentworth DE, Barnes JR (2019) Mitigating Pandemic Risk with Influenza A Virus Field Surveillance at a Swine-Human Interface. bioRxiv 585588. https://doi.org/10.1101/585588

  130. Detmer SE, Gramer MR, Goyal SM, Torremorell M (2013) In vitro characterization of influenza A virus attachment in the upper and lower respiratory tracts of pigs. Vet Pathol 50(4):648–658. https://doi.org/10.1177/0300985812467469

    Article  CAS  PubMed  Google Scholar 

  131. Bowman AS, Nolting JM, Workman JD, Cooper M, Fisher AE, Marsh B, Forshey T (2016) The inability to screen exhibition swine for influenza A virus using body temperature. Zoonoses Public Health 63(1):34–39. https://doi.org/10.1111/zph.12201

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Amy L. Vincent .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2020 This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply.

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Vincent, A.L., Anderson, T.K., Lager, K.M. (2020). A Brief Introduction to Influenza A Virus in Swine. In: Spackman, E. (eds) Animal Influenza Virus. Methods in Molecular Biology, vol 2123. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0346-8_18

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-0346-8_18

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0345-1

  • Online ISBN: 978-1-0716-0346-8

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics