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Organoids pp 249–254Cite as

Study Bacteria–Host Interactions Using Intestinal Organoids

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1576))

Abstract

The intestinal epithelial cells function to gain nutrients, retain water and electrolytes, and form an efficient barrier against foreign microbes and antigens. Researchers employed cell culture lines derived from human or animal cancer cells as experimental models in vitro for understanding of intestinal infections. However, most in vitro models used to investigate interactions between bacteria and intestinal epithelial cells fail to recreate the differentiated tissue components and structure observed in the normal intestine. The in vitro analysis of host–bacteria interactions in the intestine has been hampered by a lack of suitable intestinal epithelium culture systems. Here, we present a new experimental model using an organoid culture system to study bacterial infection.

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References

  1. Turner JR (2009) Intestinal mucosal barrier function in health and disease. Nat Rev Immunol 9(11):799–809

    Article  CAS  PubMed  Google Scholar 

  2. Robinson A, Keely S, Karhausen J, Gerich ME, Furuta GT, Colgan SP (2008) Mucosal protection by hypoxia-inducible factor prolyl hydroxylase inhibition. Gastroenterology 134(1):145–155

    Article  CAS  PubMed  Google Scholar 

  3. Hooper LV (2009) Do symbiotic bacteria subvert host immunity? Nat Rev Microbiol 7(5):367–374

    Article  CAS  PubMed  Google Scholar 

  4. Camp JG, Kanther M, Semova I, Rawls JF (2009) Patterns and scales in gastrointestinal microbial ecology. Gastroenterology 136(6):1989–2002

    Article  PubMed  Google Scholar 

  5. Neish AS (2009) Microbes in gastrointestinal health and disease. Gastroenterology 136(1):65–80

    Article  PubMed  Google Scholar 

  6. Nickerson CA, Ott CM (2004) A new dimension in modeling infectious disease. ASM News 70(4):169–175

    Google Scholar 

  7. Unsworth BR, Lelkes PI (1998) Growing tissues in microgravity. Nat Med 4(8):901–907

    Article  CAS  PubMed  Google Scholar 

  8. Sato T, Stange DE, Ferrante M, Vries RG, Van Es JH, Van den Brink S et al (2011) Long-term expansion of epithelial organoids from human colon, adenoma, adenocarcinoma, and Barrett’s epithelium. Gastroenterology 141(5):1762–1772

    Article  CAS  PubMed  Google Scholar 

  9. Sato T, van Es JH, Snippert HJ, Stange DE, Vries RG, van den Born M et al (2011) Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts. Nature 469(7330):415–418

    Article  CAS  PubMed  Google Scholar 

  10. Wang N, Zhang H, Zhang BQ, Liu W, Zhang Z, Qiao M et al (2014) Adenovirus-mediated efficient gene transfer into cultured three-dimensional organoids. PLoS One 9(4), e93608

    Article  PubMed  PubMed Central  Google Scholar 

  11. Sato T, Clevers H (2013) Primary mouse small intestinal epithelial cell cultures. Methods Mol Biol 945:319–328

    Article  PubMed  Google Scholar 

  12. Zhang YG, Wu S, Xia Y, Sun J (2014) Salmonella-infected crypt-derived intestinal organoid culture system for host-bacterial interactions. Physiol Rep 2(9)

    Google Scholar 

  13. Sun J, Hobert ME, Rao AS, Neish AS, Madara JL (2004) Bacterial activation of beta-catenin signaling in human epithelia. Am J Physiol Gastrointest Liver Physiol 287(1):G220–G227

    Article  CAS  PubMed  Google Scholar 

  14. Wu S, Ye Z, Liu X, Zhao Y, Xia Y, Steiner A et al (2010) Salmonella typhimurium infection increases p53 acetylation in intestinal epithelial cells. Am J Physiol Gastrointest Liver Physiol 298(5):G784–G794

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Ye Z, Petrof EO, Boone D, Claud EC, Sun J (2007) Salmonella effector AvrA regulation of colonic epithelial cell inflammation by deubiquitination. Am J Pathol 171(3):882–892

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Wu S, Liao AP, Xia Y, Li YC, Li JD, Sartor RB et al (2010) Vitamin D receptor negatively regulates bacterial-stimulated NF-kappaB activity in intestine. Am J Pathol 177(2):686–697

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Acknowledgements

We would like to acknowledge the NIDDK grant R01 DK105118 (J.S.).

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Correspondence to Jun Sun Ph.D., A.G.A.F. .

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© 2016 Springer Science+Business Media New York

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Zhang, Yg., Sun, J. (2016). Study Bacteria–Host Interactions Using Intestinal Organoids. In: Turksen, K. (eds) Organoids. Methods in Molecular Biology, vol 1576. Humana, New York, NY. https://doi.org/10.1007/7651_2016_6

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  • DOI: https://doi.org/10.1007/7651_2016_6

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-7616-4

  • Online ISBN: 978-1-4939-7617-1

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