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Human interstitial retinol-binding protein (IRBP): cloning, partial sequence, and chromosomal localization

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Somatic Cell and Molecular Genetics

Abstract

A cloned 2184-bp cDNA coding for human interstitial retinol-binding protein (IRBP) has been isolated and sequenced. The probe hybridized to a 5.2-kb poly(A) RNA from human retinas. Nineteen tryptic peptides (363 amino acids) sequenced and purified from bovine IRBP could be aligned with 86–88% homology to the translated sequence. Two segments approximately 200 amino acids long were found to have a 41% residue identity,suggesting an internal duplication event. This cloned cDNA was used to probe DNA samples from a panel of 29 rodent-human somatic cell hybrids, mapping the structural gene for IRBP to chromosome 10. In situ hybridization suggested a regional localization near the centromere (p11.2→q11.2), although a secondary site of hybridization at q24→25 was also observed.

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Literature cited

  1. Liou, G.I., Bridges, C.D.B., Fong, S.-L., Alvarez, R.A., and Gonzalez-Fernandez, F. (1982).Vision Res. 22:1457–1467.

    PubMed  Google Scholar 

  2. Liou, G.I., Bridges, C.D.B., and Fong, S.-L. (1982).Invest. Ophthalmol. Vis. Sci. Suppl. 22:65.

    Google Scholar 

  3. Adler, A.J., and Martin, K.J. (1982).Biochem. Biophys. Res. Commun. 108:1601–1608.

    PubMed  Google Scholar 

  4. Pfeffer, B., Wiggert, B., Lee, L., Zonnenberg, B., Newsome, D., and Chader, G. (1983).J. Cell Physiol. 117:333–341.

    PubMed  Google Scholar 

  5. Bunt-Milam, A.H., and Saari, J.C. (1983).J. Cell Biol. 97:703–712.

    PubMed  Google Scholar 

  6. Saari, J.C., Bunt-Milam, A.H., Bredberg, D.L., and Garwin, G.G. (1984).Vision Res. 24:1595–1603.

    PubMed  Google Scholar 

  7. Bridges, C.D.B., and Adler, A.J. (eds). (1985).The Interphotoreceptor Matrix in Health and Disease, (Academic Press, New York).

    Google Scholar 

  8. Bridges, C.D.B., Liou, G.I., Alvarez, R.A., Landers, R.A., Landry, A.M. Jr., and Fong, S.-L. (1986).J. Exp. Zool. 239:335–346.

    PubMed  Google Scholar 

  9. Carter-Dawson, L., Alvarez, R.A., Fong, S.-L., Liou, G.I., Sperling, H.G., and Bridges, C.D.B. (1986).Dev. Biol. 116:431–438.

    PubMed  Google Scholar 

  10. Gonzalez-Fernandez, F., Landers, R.A., Glaze-brook, P.A., Fong, S.-L., Liou, G.I., Lam, D.M.K., and Bridges, C.D.B. (1984).J. Cell Biol. 99:2092–2098.

    PubMed  Google Scholar 

  11. Bridges, C.D.B. (1985). InThe Interphotoreceptor Matrix in Health and Disease, (eds.) Bridges, C.D.B., and Adler, A.J. (Academic Press, New York), pp. 195–212.

    Google Scholar 

  12. Liou, G.I., Fong, S.-L., Beattie, W.G., Cook, R.G., Leone, J., Landers, R.A., Alvarez, R.A., Wang, C., Li, Y., and Bridges, C.D.B. (1986).Vision Res. 26:1645–1654.

    PubMed  Google Scholar 

  13. Maniatis, T., Fritsch, E.F., and Sambrook, J. (1982).Molecular Cloning: A Laboratory Manual, (Cold Spring Harbor Laboratory, Cold Spring Harbor, New York).

    Google Scholar 

  14. Benson, S.A., and Taylor, R.K. (1984).BioTechniques May/June1984:126–127.

    Google Scholar 

  15. Yanish-Perron, C., Vieira, J., and Messing, J. (1985).Gene 33:103–119.

    PubMed  Google Scholar 

  16. Hanahan, D. (1983).J. Mol. Biol. 155:557–580.

    Google Scholar 

  17. Zassenhaus, H.P., Butow, R.A., and Hannon, Y.P. (1982).Anal. Biochem. 125:125–130.

    PubMed  Google Scholar 

  18. Sanger, F., Nicklen, S., and Coulson, A.R. (1979).Proc. Natl. Acad. Sci. U.S.A. 74:5463–5467.

    Google Scholar 

  19. Dale, R.M.K., McClure, B.A., and Houchins, J.P. (1985).Plasmid 13:31–40.

    PubMed  Google Scholar 

  20. Bergsma, D.J., Chang, K.S., and Schwartz, R.J. (1985).Mol. Cell Biol. 5:1151–1162.

    PubMed  Google Scholar 

  21. Chirgwin, J.M., Przybyla, A.E., MacDonald, R.J., and Rutter, W.J. (1979).Biochemistry 18:5294–5299.

    PubMed  Google Scholar 

  22. Aviv, H., and Leder, P. (1972).Proc. Natl. Acad. Sci. U.S.A. 69:1408–1412.

    PubMed  Google Scholar 

  23. Hewick, R.M., Hunkapiller, W., Hood, L.E., and Dreyer, W.J. (1981).J. Biol. Chem. 256:7990–7997.

    Google Scholar 

  24. Lund, E., Bostock, C., Robertson, M., Christie, S., Mitchen, J.L., and Dahlberg, J.E. (1983).Mol. Cell Biol. 3:2211–2220.

    PubMed  Google Scholar 

  25. van Heyningen, V., Bobrow, M., Bodmer, W.F., Gardiner, S.E., Povey, S., and Hopkinson, D.A. (1975).Ann. Hum. Genet. 38:295–303.

    PubMed  Google Scholar 

  26. Heisterkamp, N., Groffen, J., Stephenson, J.R., Spurr, N.K., Goodfellow, P.N., Solomon, E., Carritt, B., and Bodner, W.F. (1982).Nature 299:747–749.

    PubMed  Google Scholar 

  27. Hobart, M.J., Rabbits, T.H., Goodfellow, P.N., Solomon, E., Chambers, S., Spurr, N., and Povey, S. (1981).Ann. Hum. Genet. 45:331–335.

    PubMed  Google Scholar 

  28. Chen, S.H., van Tuinen, P., Ledbetter, D.H., Smith, L.C., and Chan, L. (1986).Somat. Cell Mol. Genet. 12:303–306.

    PubMed  Google Scholar 

  29. Su, T.S., Nussbaum, R.L., Airhart, S., Ledbetter, D.H., Mohandas, T., O'Brien, W.E., and Beaudet, A.L. (1984).Am. J. Hum. Genet. 36:954–964.

    PubMed  Google Scholar 

  30. Porteous, D.J. (1985).Somat. Cell Mol. Genet. 11:445–454.

    PubMed  Google Scholar 

  31. Feinberg, A.P., and Vogelstein, B. (1983).Anal. Biochem. 132:6–13.

    PubMed  Google Scholar 

  32. Feinberg, A.P., and Vogelstein, B. (1984).Anal. Biochem. 137:266–267.

    PubMed  Google Scholar 

  33. Southern, E.M. (1975).J. Mol. Biol. 98:503–517.

    PubMed  Google Scholar 

  34. Gosden, J.R., Middleton, P.G., Rout, D., and De Angelis, C. (1986).Cytogenet. Cell Genet. 43:150–153.

    PubMed  Google Scholar 

  35. Fong, S.-L., Liou, G.I., Landers, R.A., Alvarez, R.A., Gonzalez-Fernandez, F., Glazebrook, P.A., Lam, D.M.K., and Bridges, C.D.B. (1984).J. Neurochem. 42:1667–1676.

    PubMed  Google Scholar 

  36. Barrett, D.J., Redmond, T.M., Wiggert, B., Oprian, D.D., Chader, G.J., and Nickerson, J.M. (1985).Biochem. Biophys. Res. Commun. 131:1086–1093.

    PubMed  Google Scholar 

  37. Rask, L., Anundi, H., Böhme, J., Eriksson, U., Ronne, H., Sege, K., and Peterson, P.A. (1981).Ann. NY Acad. Sci. 359:79–90.

    PubMed  Google Scholar 

  38. Newcomer, M.E., Jones, T.A., Aqvist, J., Sundelin, J., Eriksson, U., Rask, L., and Peterson, P.A. (1984).EMBO J. 3:1451–1454.

    PubMed  Google Scholar 

  39. Laurent, B.C., Nilsson, M.H.L., Bavik, C.O., Jones, T.A., Sundelin, J., and Peterson, P.A. (1985).J. Biol. Chem. 260:11476–11480.

    PubMed  Google Scholar 

  40. Tang, J., James, M.N.G., Hsu, I.N., Jenkins, J.A., and Blundell, T.L. (1978).Nature 271:618–621.

    PubMed  Google Scholar 

  41. Fong, S.-L., Liou, G.I., Landers, R.A., Alvarez, R.A., and Bridges, C.D.B. (1984).J. Biol. Chem. 259:6534–6542.

    PubMed  Google Scholar 

  42. Dayhoff, M.O. (1978).Atlas of Protein Sequence and Structure, Vol. 5, Suppl. 3, (National Biomedical Research Foundation, Georgetown University Medical Center, Washington).

    Google Scholar 

  43. Aitken, D.A., and Ferguson-Smith, M.A. (1978).Cytogenet. Cell Genet. 22:468–471.

    PubMed  Google Scholar 

  44. Dallapiccola, B., Novelli, G., Micara, G., Delaroche, I., Moric-Petrovic, S., and Magnani, M. (1984).Hum. Hered. 34:156–160.

    PubMed  Google Scholar 

  45. Koch, G., Lalley, P.A., McAvoy, M., and Shows, T.B. (1981).Somat. Cell Genet. 7:345–358.

    PubMed  Google Scholar 

  46. Mueller, O.T., Henry, W.M., Haley, L.L., Byers, M.G., Eddy, R.L., and Shows, T.B. (1986).Proc. Natl. Acad. Sci. U.S.A. 83:1817–1821.

    PubMed  Google Scholar 

  47. O'Donnell, J.J., Vannas-Sulonen, K.M., Shows, T.B., and Cox, D.R. (1985).Cytogenet. Cell Genet. 40:716.

    Google Scholar 

  48. Inui, K., Kao, F.T., Fujibayashi, S., Jones, C., Morse, H.G., Law, M.L., and Wenger, D.A. (1985).Hum. Genet. 69:197–200.

    PubMed  Google Scholar 

  49. Matteson, K.J., Picado-Leonard, J., Chung, B.C., Mohandas, T.K., and Miller, W.L. (1986).J. Clin. Endocrinol. Metab. 63:789–791.

    PubMed  Google Scholar 

  50. McKusick, V.A. (1986).Mendelian Inheritance in Man, (Johns Hopkins University Press, Baltimore, Maryland).

    Google Scholar 

  51. Liou, G.I., Li, Y., Wang, C., Fong, S.-L., Bhattacharya, S., and Bridges, C.D.B. (1987).Nucleic Acids Res. 15:3196.

    PubMed  Google Scholar 

  52. Hopp, T.P., and Woods, K.R. (1981).Proc. Natl. Acad. Sci. U.S.A. 78:3824–3828.

    PubMed  Google Scholar 

  53. Mathew, C.G.P., Chin, K.S., Easton, D.F., Thorpe, K., Carter, C., Liou, G.I., Fong, S.-L., Bridges, C.D.B., Haak, H., Nieuwenhuijzen Kruseman, A.C., Schifter, S., Hansen, H., Telenius, H., Tele-nius-Berg, M. and Ponder, B.A.J. (1987).Nature (in press).

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Liou, G.I., Fong, S.L., Gosden, J. et al. Human interstitial retinol-binding protein (IRBP): cloning, partial sequence, and chromosomal localization. Somat Cell Mol Genet 13, 315–323 (1987). https://doi.org/10.1007/BF01534925

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  • DOI: https://doi.org/10.1007/BF01534925

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