Switching the proton-coupled electron transfer mechanism for non-canonical tyrosine residues in a de novo protein

Astrid Nilsen-Moe; Clorice R. Reinhardt; Ping Huang; Hemlata Agarwala; Rosana Lopes; Mauricio Lasagna; Starla Glover; Sharon Hammes-Schiffer; Cecilia Tommos; Leif Hammarström

doi:10.1039/D3SC05450K

Switching the proton-coupled electron transfer mechanism for non-canonical tyrosine residues in a de novo protein†

Astrid Nilsen-Moe,^a Clorice R. Reinhardt,

^b Ping Huang,

^a Hemlata Agarwala,^c Rosana Lopes,

^d Mauricio Lasagna,

^d Starla Glover,^a Sharon Hammes-Schiffer,

^e Cecilia Tommos

*^d and Leif Hammarström

*^a

Author affiliations

* Corresponding authors

^a Department of Chemistry, Ångström Laboratory, Uppsala University, Box 523, 75120 Uppsala, Sweden
E-mail: leif.hammarstrom@kemi.uu.se

^b Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA

^c Technical University Munich, Campus Straubing for Biotechnology and Sustainability, Uferstraße 53, 94315 Straubing, Germany

^d Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA
E-mail: tommos@tamu.edu

^e Department of Chemistry, Yale University, New Haven, CT 06520, USA

Abstract

The proton-coupled electron transfer (PCET) reactions of tyrosine (Y) are instrumental to many redox reactions in nature. This study investigates how the local environment and the thermodynamic properties of Y influence its PCET characteristics. Herein, 2- and 4-mercaptophenol (MP) are placed in the well-folded α₃C protein (forming 2MP-α₃C and 4MP-α₃C) and oxidized by external light-generated [Ru(L)₃]³⁺ complexes. The resulting neutral radicals are long-lived (>100 s) with distinct optical and EPR spectra. Calculated spin-density distributions are similar to canonical Y˙ and display very little spin on the S–S bridge that ligates the MPs to C₃₂ inside the protein. With 2MP-α₃C and 4MP-α₃C we probe how proton transfer (PT) affects the PCET rate constants and mechanisms by varying the degree of solvent exposure or the potential to form an internal hydrogen bond. Solution NMR ensemble structures confirmed our intended design by displaying a major difference in the phenol OH solvent accessible surface area (≤∼2% for 2MP and 30–40% for 4MP). Additionally, 2MP-C₃₂ is within hydrogen bonding distance to a nearby glutamate (average O–O distance is 3.2 ± 0.5 Å), which is suggested also by quantum mechanical/molecular mechanical (QM/MM) molecular dynamics simulations. Neither increased exposure of the phenol OH to solvent (buffered water), nor the internal hydrogen bond, was found to significantly affect the PCET rates. However, the lower phenol pK_a values associated with the MP-α₃C proteins compared to α₃Y provided a sufficient change in PT driving force to alter the PCET mechanism. The PCET mechanism for 2MP-α₃C and 4MP-α₃C with moderately strong oxidants was predominantly step-wise PTET for pH values, but changed to concerted PCET at neutral pH values and below when a stronger oxidant was used, as found previously for α₃Y. This shows how the balance of ET and PT driving forces is critical for controlling PCET mechanisms. The presented results improve our general understanding of amino-acid based PCET in enzymes.

Chemical Science

Switching the proton-coupled electron transfer mechanism for non-canonical tyrosine residues in a de novo protein†

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Switching the proton-coupled electron transfer mechanism for non-canonical tyrosine residues in a de novo protein

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